CF835848

Overview
NameCF835848
Unique NameCF835848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2221 contig Csv1_Contig2221:88..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 55/136 (40.44%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  321 VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            V   +  EL   T +F   + IG G YG+VY G L  G   A+K+ +  S Q  +EF  ++ ++SRL H N V LLGYC     ++L YE+  NGSL D L  R      QP   LS   R++IA+G+A+G+ YLH
Sbjct:  616 VKGYNFTELDSATSSFSDLSQIGRGGYGKVYKGHLPGGLVVAVKRAEQGSLQGQKEFFTEIELLSRLHHRNLVSLLGYCDQKGEQMLVYEYMPNGSLQDALSAR----FRQP---LSLALRLRIALGSARGILYLH 744          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 50/133 (37.59%), Postives = 75/133 (56.39%), Query Frame = 3
Query:  336 VDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDAS---KQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            + +L+  T NF    L+GEGS GRVY      G   A+KK+D++       E     V  +S+++H+N  +L+GYC +    +L YE+  NGSLH+ LH    +      P L+W  RV+IA+G A+ +EYLH
Sbjct:  394 LSDLQSATANFSPGNLLGEGSIGRVYRAKYSDGRTLAVKKIDSTLFDSGKSEGITPIVMSLSKIRHQNIAELVGYCSEQGHNMLVYEYFRNGSLHEFLH----LSDCFSKP-LTWNTRVRIALGTARAVEYLH 521          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5596_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 52/129 (40.31%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  342 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            E+ ++T NFG   ++GEG +G V +G +      A+K L  +S Q  +EF A+V ++ R+ H N V L+GYC +G    L YEF  NG L   L G+ G       P+++W  R++IA  AA GLEYLH
Sbjct:  574 EVTKMTNNFGR--VVGEGGFGVVCHGTVNGSEQVAVKLLSQSSTQGYKEFKAEVDLLLRVHHTNLVSLVGYCDEGDHLALIYEFVPNGDLRQHLSGKGG------KPIVNWGTRLRIAAEAALGLEYLH 694          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 48/138 (34.78%), Postives = 79/138 (57.25%), Query Frame = 3
Query:  318 EVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL--DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            ++   ++ EL   T+NF    ++G G +G+VY G L  G+  A+K+L  + +K  + +F  +V M+S   H N ++L G+C+  T R+L Y + +NGS+   L  R      +  P L W +R  IA+G+A+GL YLH
Sbjct:  278 QLKRFTLRELLVATDNFSNKNVLGRGGFGKVYKGRLADGNLVAVKRLKEERTKGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRER-----PEGNPALDWPKRKHIALGSARGLAYLH 410          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: KPRO_MAIZE (Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  333 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            S  EL + T  F     +G G  G VY G+L+     A+KKL+  +Q  E F A++S++ R+ H N V++ G+C +G+ R+L  E+  NGSL +IL    G        +L W+ R  IA+G AKGL YLH
Sbjct:  525 SYRELVKATRKFKVE--LGRGESGTVYKGVLEDDRHVAVKKLENVRQGKEVFQAELSVIGRINHMNLVRIWGFCSEGSHRLLVSEYVENGSLANILFSEGG------NILLDWEGRFNIALGVAKGLAYLH 647          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: CRK29_ARATH (Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana GN=CRK29 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  330 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            +  + LK  T+NF +   +G G +G VY G+   G   A+K+L   S Q D EF  ++ ++++L+H N V+L+G+C+ G  R+L YEF  N SL   +         +   +L W  R K+  G A+GL YLH
Sbjct:  345 VHFETLKTATDNFSSENELGRGGFGSVYKGVFPQGQEIAVKRLSGNSGQGDNEFKNEILLLAKLQHRNLVRLIGFCIQGEERLLVYEFIKNASLDQFIF------DTEKRQLLDWVVRYKMIGGIARGLLYLH 471          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5005_ARATH (Probable receptor-like protein kinase At5g20050 OS=Arabidopsis thaliana GN=At5g20050 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 46/133 (34.59%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  336 VDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTS---RVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            +++L+E T+ F   +LIG+G  G V+ G+LK G   A+K+++  ++ + EF ++V+ ++ ++H+N V+L GY    ++   R L Y++  N SL   +   +G +G   G  LSW+QR ++A+  AK L YLH
Sbjct:   95 LEDLEEATDGF--RSLIGKGGSGSVFKGVLKDGSQVAVKRIEGEEKGEREFRSEVAAIASVQHKNLVRLYGYSSSTSANRPRFLVYDYIVNSSLDIWIFPDRGNRGRSGGGCLSWEQRYQVAIDVAKALAYLH 225          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: CRK39_ARATH (Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 51/125 (40.80%), Postives = 74/125 (59.20%), Query Frame = 3
Query:  357 TENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSL-HDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            T+ F +   +G+G +G VY G L +G   A+K+L   S Q D EF  +VS+++RL+H N V+LLG+C +G  ++L YEF  N SL H I    K         +L+W+ R +I  G A+GL YLH
Sbjct:  350 TDEFSSENTLGQGGFGTVYKGTLLNGQEVAVKRLTKGSGQGDIEFKNEVSLLTRLQHRNLVKLLGFCNEGDEQILVYEFVPNSSLDHFIFDDEK-------RSLLTWEMRYRIIEGIARGLLYLH 467          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 57/134 (42.54%), Postives = 74/134 (55.22%), Query Frame = 3
Query:  330 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDAS-KQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGP-VLSWQQRVKIAVGAAKGLEYLH 725
            +S D+L + T +F    +IG G +G VY   L  G   AIKKL     Q + EF A+V  +SR +H N V L G+C     R+L Y +  NGSL   LH R        GP +L W+ R++IA GAAKGL YLH
Sbjct:  722 LSYDDLLDSTNSFDQANIIGCGGFGMVYKATLPDGKKVAIKKLSGDCGQIEREFEAEVETLSRAQHPNLVLLRGFCFYKNDRLLIYSYMENGSLDYWLHER------NDGPALLKWKTRLRIAQGAAKGLLYLH 849          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: CRK43_ARATH (Putative cysteine-rich receptor-like protein kinase 43 OS=Arabidopsis thaliana GN=CRK43 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 51/128 (39.84%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  345 LKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDAS-KQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            LK+ T NF  +  +G G YG V+ G L  G   AIK+L  S K+P +E   ++ ++SR +H+N V+LLG C    +  + YEF +N SL  IL   +  K       L W++R  I +G A+GLEYLH
Sbjct:  324 LKKATNNFNESCKLGVGGYGEVFKGTLSDGREIAIKRLHVSGKKPRDEIHNEIDVISRCQHKNLVRLLGCCFTNMNSFIVYEFLANTSLDHILFNPEKKK------ELDWKKRRTIILGTAEGLEYLH 445          
The following BLAST results are available for this feature:
BLAST of CF835848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
Y5374_ARATH6.800e-1940.44Probable LRR receptor-like serine/threonine-protei... [more]
SRF5_ARATH6.800e-1937.59Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
Y5596_ARATH8.881e-1940.31Probable LRR receptor-like serine/threonine-protei... [more]
SERK4_ARATH8.881e-1934.78Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
KPRO_MAIZE8.881e-1938.93Putative receptor protein kinase ZmPK1 OS=Zea mays... [more]
CRK29_ARATH8.881e-1935.34Cysteine-rich receptor-like protein kinase 29 OS=A... [more]
Y5005_ARATH1.160e-1834.59Probable receptor-like protein kinase At5g20050 OS... [more]
CRK39_ARATH1.160e-1840.80Putative cysteine-rich receptor-like protein kinas... [more]
PSKR1_ARATH1.515e-1842.54Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
CRK43_ARATH1.515e-1839.84Putative cysteine-rich receptor-like protein kinas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835848 ID=CF835848; Name=CF835848; organism=Citrus sinensis; type=EST; length=725bp
AAGCGCTTTACTACTTTTTTCTTCATCCTGCGCACCTATCGTCGTCTTAT
CCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATTCAAAATATCCAGCT
CGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAGAGGGGCATTATTGT
GGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAGAAGATGATATGCAT
AAAGCTGCTGACAATGGCAATGCATACATGGTTAAAAGTTCAGCAGGAAC
TGATGGAGCCTATCATGCATCTGAAGCAGCACCTAAGGGTGCTCAAGCTG
TGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAGTGGATGAATTGAAG
GAAATTACTGAGAACTTTGGGACTAATGCTTTGATTGGAGAAGGTTCATA
TGGAAGAGTATATTATGGGATTCTTAAAAGTGGACATGCTGCAGCAATAA
AAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGTTTTTAGCACAGGTT
TCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTTCAGCTGCTCGGGTA
TTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGAGTTTGCATCTAATG
GATCTCTTCATGATATTCTTCATGGGAGGAAAGGTGTAAAAGGAGCTCAG
CCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAAATTGCTGTAGGGGC
TGCGAAAGGGCTTGAATACTTGCAT
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