CF835850

Overview
NameCF835850
Unique NameCF835850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835850 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.906e-27
Identity = 71/200 (35.50%), Postives = 92/200 (46.00%), Query Frame = 3
Query:  114 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 710
            F+I NNC  T+W A +P GGG +L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D   +T  C    +Y++ FCP
Sbjct:   23 FNIKNNCGSTIWPAGIPVGGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGQPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPND--VATHACSGNNNYQITFCP 173          
BLAST of CF835850 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.007e-26
Identity = 72/200 (36.00%), Postives = 91/200 (45.50%), Query Frame = 3
Query:  114 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 710
            F+I NNC  T+W A +P GGG  L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAEY +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D   +T  C    +Y++ FCP
Sbjct:   23 FNIKNNCGFTIWPAGIPVGGGFALGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGRPPATLAEYTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPND--VATHACSGNNNYQITFCP 173          
BLAST of CF835850 vs. ExPASy Swiss-Prot
Match: PRR3_JUNVI (Pathogenesis-related protein (Fragment) OS=Juniperus virginiana PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.718e-26
Identity = 53/83 (63.86%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  111 KFDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEY 359
            KFDI N C  TVWAA +PGGG++LD+GQTWT+  A GT +AR W RT C FDASGKG C+TGDC   L C   GA P TLAEY
Sbjct:   21 KFDIKNQCGYTVWAAGLPGGGKRLDQGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGRQLSCTVSGAVPATLAEY 103          
BLAST of CF835850 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.530e-26
Identity = 71/200 (35.50%), Postives = 96/200 (48.00%), Query Frame = 3
Query:  114 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 710
            F ITNNC  TVW AA+P GGG+QLD+GQTWT+    GT + RIW RT C F+  G G C+TGDC G L C   G  P TLAE+++    + D+ D+S ID +N+ M+FS           C+     +C +                                       CPD Y  P D    T +C + ++Y++ FCP
Sbjct:   24 FTITNNCGYTVWPAAIPVGGGQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFN-GGSGSCQTGDCAGALSCTLSG-QPATLAEFSIG--GEHDYYDISVIDVYNLAMDFS-----------CSTGDALQCRD-------------------------------------SSCPDAYHQPDD--PKTHSCNTNSNYQITFCP 169          
BLAST of CF835850 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.743e-24
Identity = 71/200 (35.50%), Postives = 91/200 (45.50%), Query Frame = 3
Query:  114 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 710
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDGFN+ M+FS           C+  +  +C +                                       CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGFNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPND--VATHACNGNSNYQITFCP 169          
BLAST of CF835850 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.112e-24
Identity = 74/200 (37.00%), Postives = 94/200 (47.00%), Query Frame = 3
Query:  114 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 710
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +       LK                 C +SG              CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGV------ALK-----------------CRDSG--------------CPDAYHHPND--VATHACNGNSNYQITFCP 169          
BLAST of CF835850 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.112e-24
Identity = 70/200 (35.00%), Postives = 91/200 (45.50%), Query Frame = 3
Query:  114 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 710
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +  +C +                                       CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPND--VATHACNGNSNYQITFCP 169          
The following BLAST results are available for this feature:
BLAST of CF835850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PR1A_HORVU5.906e-2735.50Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
TLP_WHEAT1.007e-2636.00Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
PRR3_JUNVI1.718e-2663.86Pathogenesis-related protein (Fragment) OS=Juniper... [more]
RST4_AVESA6.530e-2635.50Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
RST1_AVESA2.743e-2435.50Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST3_AVESA6.112e-2437.00Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST2_AVESA6.112e-2435.00Thaumatin-like pathogenesis-related protein 2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835850 ID=CF835850; Name=CF835850; organism=Citrus sinensis; type=EST; length=782bp
ACTTATCTATCTTTATATTCATTATCCGCTCCAAAATGAGATTCATTAAA
GCTCTTCCCATTTCTTCTGCTCTTCTTATTATCATTTCCATCACCCTGAC
TCATGCTGCCAAATTCGATATCACAAACAATTGCCCCGACACCGTCTGGG
CCGCCGCTGTGCCCGGAGGCGGCAGGCAACTCGACAAGGGTCAAACATGG
ACCATCACCGCCGCGCCAGGCACAAAAGCAGCCCGCATTTGGGCTCGAAC
CAAATGCCAGTTTGATGCTTCCGGCAAAGGCAAATGCGAGACCGGTGACT
GTAACGGACTCCTCGAGTGCCAAGGCTACGGTGCAGCACCTAACACCTTG
GCCGAGTACGCGTTGAAGCAATTCAATGACATGGATTTCATTGACATGTC
CAACATTGACGGATTCAATGTTCCCATGGAATTTAGCTCTGTCTCTCCCT
CATGCAACCGCGTGATCAAGTGCACTGCTAACATTCTTGGCGAGTGCCCT
AATGAATTGAAGGTTCCTGGAGGATGTAACGGGCCGTGCCCCGTGTTCAA
GACCGACGAGTACTGTTGCAATTCAGGCAACTGCGGACCTACAGGTTTCT
CCAAGTTTTTCAAGGATAGGTGCCCGGATGTTTACAGTTACCCTAAGGAT
GACGCTACCAGCACATTTACTTGCCCGAGTGGGACCGACTACAAGGTTGT
ATTCTGCCCCTGAAGCATTTTTTTCAGGGGTAGAAATGGAAATAGAAAAC
TATACGACGTAGTCTTCTGTATTTGTTATAAT
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