CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: GNO_GLUOX (Gluconate 5-dehydrogenase OS=Gluconobacter oxydans GN=gno PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.547e-22
Identity = 58/172 (33.72%), Postives = 92/172 (53.49%), Query Frame = -3
Query:  240 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVN 755
            G ++IL+NNAG        EF+ +D+  +M+TN  + + + Q     +   G G I+ I SV   +A P  + Y +TKGA+  LTK +A +WG+  +++N +AP    T + + +  D    E    L  RTP  R G+  E+     FL   A+S+V GQV  +DGG +V+
Sbjct:   87 GPIDILINNAGIQRRAPLEEFSRKDWDDLMSTNVNAVFFVGQAVARHMIPRGRGKIVNICSVQSELARPGIAPYTATKGAVKNLTKGMATDWGRHGLQINGLAPGYFATEMTERLVADE---EFTDWLCKRTPAGRWGQVEELVGAAVFLSSRASSFVNGQVLMVDGGITVS 255          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: Y4VI_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4vI OS=Rhizobium sp. (strain NGR234) GN=NGR_a01150 PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.917e-21
Identity = 61/173 (35.26%), Postives = 95/173 (54.91%), Query Frame = -3
Query:  240 KLNILVNNAGTTIPKEATEFT-MEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY-SVN 752
            ++ +LVNNAG      AT  T +EDF   +  N   AY ++     L+K      I+ ++S+ G++  P  S YA++K  +  +TK+LAC W    IRV AVAP  +RT ++  +E+  ++    S +  R P+ R   P+E++  V FL    ASY+TG    +DGG+ SVN
Sbjct:   83 RIEVLVNNAGIGPTMAATADTALEDFQRALAINLVGAYSVACETAKLMKPGAA--IVNVASLAGLLGNPKRSAYAASKAGLISITKSLACRWASRGIRVTAVAPGHVRTPMVAELERAGKL--DVSAIRRRVPLGRIARPDEIARAVRFLASAQASYITGSTLVVDGGWMSVN 251          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: KDUD_ECOLI (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=kduD PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.917e-21
Identity = 62/183 (33.88%), Postives = 99/183 (54.10%), Query Frame = -3
Query:  249 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNG----NIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 785
            L++   +EF G ++ILVNNAG    ++A EF+ +D+  +M  N +S + +SQ A     A GNG    NI  + S  G I VP    Y ++K  +  +T+ +A EW K NI VNA+AP  + T+    +  D    + ++ ++ R P  R G P+++   + FL   A+ YV G    +DGG+
Sbjct:   75 LLDRAVAEF-GHIDILVNNAGLIRREDALEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVP---SYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADE---QRSAEILDRIPAGRWGLPSDLMGPIVFLASSASDYVNGYTIAVDGGW 250          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.810e-21
Identity = 66/179 (36.87%), Postives = 96/179 (53.63%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            L+ET   EF G L++++NNAG   P  + E ++E+++ ++ TN   A+  S+ A      +   GN+I +SSV  +I  PL   YA++KG M  +T+ LA E+    IRVN + P  I T +      DP        +IP   I   G+P E++SV AFL    ASYVTG     DGG
Sbjct:   75 LVETAVKEF-GSLDVMINNAGVENPVPSHELSLENWNQVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAIDTPINAEKFADPEQRADVESMIPMGYI---GKPEEIASVAAFLASSQASYVTGITLFADGG 249          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.448e-20
Identity = 57/169 (33.73%), Postives = 91/169 (53.85%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRT-SLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G+L+ILVNNAG        E + EDF   M  N +  + LS+ A   +K  G G I+ +SS  G+I +P   +Y+ +K A+  LT++LA ++    IRVNAV P   ++  L+  ++  P   E   ++  R P+ R G+  E++  + F     A ++TG +  IDGG
Sbjct:   79 GRLDILVNNAGIVPYGNIEETSEEDFDKTMAVNVKGPFLLSKYAVEQMKKQGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDYVDYGIRVNAVCPGTTQSEGLMARVKASPNPEELLKKMTSRIPMKRLGKEEEIAFAILFAACDEAGFMTGSIINIDGG 247          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.891e-20
Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            L++T   EF G L++++NNAG   P  + E ++++++ ++ TN   A+  S+ A      +   GN+I +SSV  +I  PL   YA++KG M Q+T+ LA E+    IRVN + P  + T +      DP        +IP   I   G+P EV++V AFL    ASYVTG     DGG
Sbjct:   75 LVQTAIKEF-GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKQMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVESMIPMGYI---GKPEEVAAVAAFLASSQASYVTGITLFADGG 249          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_BACSU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Bacillus subtilis GN=fabG PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 3.225e-20
Identity = 60/180 (33.33%), Postives = 94/180 (52.22%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            Q +++   S F   ++ILVNNAG T          +++  ++  N +  ++ ++     +    +G II +SS+ GV   P  + Y + K  +  LTK+ A E    NI VNA+AP  I T + D + KD +       ++ + P+ R GEP++VSSVV FL    A Y+TGQ   IDGG
Sbjct:   70 QNMIKETLSVFS-TIDILVNNAGITRDNLIMRMKEDEWDDVININLKGVFNCTKAVTRQMMKQRSGRIINVSSIVGVSGNPGQANYVAAKAGVIGLTKSSAKELASRNITVNAIAPGFISTDMTDKLAKDVQ-----DEMLKQIPLARFGEPSDVSSVVTFLASEGARYMTGQTLHIDGG 243          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHG_BACSU (Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gdh PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.212e-20
Identity = 64/181 (35.36%), Postives = 96/181 (53.04%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            + +++T   EF G L+I++NNAG   P  + E  ++D+  ++ TN   A+  S+ A      +   GN+I +SSV  VI  PL   YA++KG +  +T+ LA E+    IRVN + P  I T +      DP+       +IP   I   GEP E+++V A+L    ASYVTG     DGG
Sbjct:   73 KNIVQTAIKEF-GTLDIMINNAGLENPVPSHEMPLKDWDKVIGTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEVIPWPLFVHYAASKGGIKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPKQKADVESMIPMGYI---GEPEEIAAVAAWLASKEASYVTGITLFADGG 249          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHGA_BACME (Glucose 1-dehydrogenase A OS=Bacillus megaterium GN=gdhA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.502e-20
Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            L++T   EF G L++++NNAG   P  + E ++++++ ++ TN   A+  S+ A      +   GN+I +SSV  +I  PL   YA++KG M  +T+ LA E+    IRVN + P  + T +      DP        +IP   I   G+P EV++V AFL    ASYVTG     DGG
Sbjct:   75 LVQTAIKEF-GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPEQRADVESMIPMGYI---GKPEEVAAVAAFLASSQASYVTGITLFADGG 249          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: KDUD_DICD3 (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Dickeya dadantii (strain 3937) GN=kduD PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.185e-20
Identity = 62/181 (34.25%), Postives = 98/181 (54.14%), Query Frame = -3
Query:  249 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQ-LAYPLLKASGNGNIIFISSVTGVI-AVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 785
            L+E   +EF GK++ILVNNAG    ++A EF+ +++  +M  N +S + +SQ +A   +K    G II I+S+      +P+ S  AS K  M  +T+ +A EW K NI VNA+AP  + T+    +  D    + +  ++ R P  R G P ++     FL   A+ YV G    +DGG+
Sbjct:   75 LVEKAVAEF-GKVDILVNNAGIIRREDAIEFSEKNWDDVMNLNIKSVFFMSQTVARQFIKQGHGGKIINIASMLSFQGGIPVPSYTASKKRVMG-ITRIVANEWAKHNINVNAIAPGYMATNNTQHVRAD---QDRSKEILDRIPAGRWGLPQDLQGPAVFLASSASDYVNGYTIAVDGGW 250          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
GNO_GLUOX1.547e-2233.72Gluconate 5-dehydrogenase OS=Gluconobacter oxydans... [more]
Y4VI_RHISN2.917e-2135.26Uncharacterized short-chain type dehydrogenase/red... [more]
KDUD_ECOLI2.917e-2133.882-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=E... [more]
DHG2_BACME3.810e-2136.87Glucose 1-dehydrogenase 2 OS=Bacillus megaterium G... [more]
Y325_THEMA1.448e-2033.73Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
DHG3_BACME1.891e-2035.75Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
FABG_BACSU3.225e-2033.333-oxoacyl-[acyl-carrier-protein] reductase OS=Baci... [more]
DHG_BACSU4.212e-2035.36Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gd... [more]
DHGA_BACME5.502e-2035.20Glucose 1-dehydrogenase A OS=Bacillus megaterium G... [more]
KDUD_DICD37.185e-2034.252-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=D... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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