CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: NODG_RHIS3 (Nodulation protein G OS=Rhizobium sp. (strain N33) GN=nodG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.163e-16
Identity = 56/170 (32.94%), Postives = 91/170 (53.53%), Query Frame = -3
Query:  243 LNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLS-QLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 749
            ++ILVNNAG T        +  D+ T++  N  + + L+ +L +P+++   +G II I+SV GV   P  + Y ++K  M   +K+LA E    NI VN VAP  I +++ D +       +    ++   P  R G   EV+S VA+L    A+YVTGQ   ++GG ++
Sbjct:   81 VDILVNNAGITKDGLFVRMSDADWDTVLEVNLTAVFRLTRELTHPMMRRR-HGRIINITSVVGVTGNPGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDKLND-----KQKEAIMAAIPTRRMGTSVEVASAVAYLASNEAAYVTGQTIHVNGGLAM 244          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: STCU_EMENI (Versicolorin reductase OS=Emericella nidulans GN=stcU PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.826e-16
Identity = 61/190 (32.11%), Postives = 100/190 (52.63%), Query Frame = -3
Query:  252 KLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVI-AVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK----------DPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 788
            KLM+     F G L+I+ +NAG        + T ++F  +   N    + +++ AY  L+  G   II  SS T  +  VP  ++Y+ +KGA++   + LA + G   I VNAVAP  I+T +  S+ +          D +V E A+ L   +P+ R G P +V+ VV+FL   AA +++G++  +DGG
Sbjct:   78 KLMDQAVEHF-GYLDIVSSNAGIVSFGHVKDVTPDEFDRVFRVNTRGQFFVAREAYRHLREGGR--IILTSSNTASVKGVPRHAVYSGSKGAIDTFVRCLAIDCGDKKITVNAVAPGAIKTDMFLSVSREYIPNGETFTDEQVDECAAWL---SPLNRVGLPVDVARVVSFLASDAAEWISGKIIGVDGG 261          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: SOU2_CANAL (Sorbose reductase homolog SOU2 OS=Candida albicans GN=SOU2 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.826e-16
Identity = 56/187 (29.95%), Postives = 101/187 (54.01%), Query Frame = -3
Query:  243 QKLMETVCSEFDGKLNILVNNAGT--TIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTG-VIAVP-LCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 791
            +K+++ + S+F G ++I V NAG   T   E     ++ ++ ++  +  S Y+ + +  P+ +  G G+ IF +S++  ++ VP L + Y + K  +  L+K+L+ EW     RVN+V+P  I T L +  + D +     S+ +  TP+ R  +P E+     +L   AASY TG    +DGGY+V
Sbjct:  100 EKVVKQIESDF-GTIDIFVANAGVAWTEGPEIDVKGVDKWNKVVDVDLNSVYYCAHVVGPIFRKKGKGSFIFTASMSASIVNVPQLQAAYNAAKAGVKHLSKSLSVEWAPF-ARVNSVSPGYIATHLSEFADPDVK-----SKWLQLTPLGREAKPRELVGAYLYLASDAASYTTGADLAVDGGYTV 279          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: PECR_RAT (Peroxisomal trans-2-enoyl-CoA reductase OS=Rattus norvegicus GN=Pecr PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.826e-16
Identity = 53/173 (30.64%), Postives = 86/173 (49.71%), Query Frame = -3
Query:  243 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWII--RTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 755
            GK+N LVNNAG      A + T + +  ++ TN    +++ +  Y        G+I+ I  +      P  +   + +  +  LTK +A  W    +R+N VAP  I  +T++ +  E    + E A   IP     R G P E+S +V FL  PAAS++TGQ+  +DGG ++
Sbjct:   99 GKINFLVNNAGGQFMAPAEDITAKGWQAVIETNLTGTFYMCKAVYNSWMKDHGGSIVNIIVLLNN-GFPTAAHSGAARAGVYNLTKTMALTWASSGVRINCVAPGTIYSQTAVDNYGELGQTMFEMAFENIPAK---RVGLPEEISPLVCFLLSPAASFITGQLINVDGGQAL 267          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.826e-16
Identity = 54/182 (29.67%), Postives = 91/182 (50.00%), Query Frame = -3
Query:  252 RQKLMETVCSEFDGKLNILVNNAGTT-IPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 794
            R+KL+        G ++ILV+NA          + T E ++ +++ N  ++  + +   P ++  G G+++ +SSV G +  P    Y  +K A+  LTKN A E    NIRVN +AP +I+T     + K+    E     +    I R G+P +   +V+FLC   ASY+ G+   + GG
Sbjct:   78 REKLVNMALKLHQG-IDILVSNAAVNPFFGNLMDVTEEVWNKVLSINVTASAMMIKAVVPAMEKRGGGSVVIVSSVAGFVLFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTHFSSVLWKEKAREEMIKETM---QIRRLGKPEDCVGIVSFLCSEDASYINGETVVVGGG 255          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: HSD_STREX (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Streptomyces exfoliatus PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.690e-16
Identity = 57/183 (31.15%), Postives = 91/183 (49.73%), Query Frame = -3
Query:  246 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPG-EPNEVSSVVAFLCLPAASYVTGQVFCIDGGYS 791
            Q+++     EF G ++ LVNNAG +        ++E F  ++  N    +   +   P +K +G G+I+ ISS  G++ + L S Y ++K  +  L+K  A E G D IRVN+V P +  T +          +       P TP+ R G EP E++  V  L    +SYVTG    +DGG++
Sbjct:   68 QRVVAYAREEF-GSVDGLVNNAGISTGMFLETESVERFRKVVDINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETG-----IRQGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGWT 244          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_CHLPN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia pneumoniae GN=fabG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.690e-16
Identity = 51/167 (30.54%), Postives = 85/167 (50.90%), Query Frame = -3
Query:  252 KLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 752
            K++ILVNNAG T        + +D+ ++++TN  S Y+        +  + +G+II ++S+   I     + YA+ K  +   TK+LA E    NIRVN +AP  I T +   +  + +     +  +   P+ R G P +V+ V  FL    +SY+T Q   +DGG
Sbjct:   84 KIDILVNNAGITRDNLLMRMSEDDWQSVISTNLTSLYYTCSSVIRHMIKARSGSIINVASIVAKIGSAGQTNYAAAKAGIIAFTKSLAKEVAARNIRVNCLAPGFIETDMTSVLNDNLK-----AEWLKSIPLGRAGTPEDVARVALFLASQLSSYMTAQTLVVDGG 245          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: NODG_RHIME (Nodulation protein G OS=Rhizobium meliloti GN=nodG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.820e-16
Identity = 54/169 (31.95%), Postives = 86/169 (50.89%), Query Frame = -3
Query:  243 LNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 749
            ++ILVNNAG T           D+  ++  N  + + L++     +    NG II ++SV G I  P  + Y ++K  M   +K+LA E    NI VN VAP  I +++ D +    +      +++   PI R G   EV+S VA+L    A+YVTGQ   ++GG ++
Sbjct:   81 VDILVNNAGITKDGLFLHMADPDWDIVLEVNLTAMFRLTREITQQMIRRRNGRIINVTSVAGAIGNPGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDKLNHKQK-----EKIMVAIPIHRMGTGTEVASAVAYLASDHAAYVTGQTIHVNGGMAM 244          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: MTDH_UROFA (Probable NADP-dependent mannitol dehydrogenase OS=Uromyces fabae GN=PIG8 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.820e-16
Identity = 53/172 (30.81%), Postives = 90/172 (52.33%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG--NGNIIFISSVTGVIAV-PLCS-IYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G +  L+ NAG ++ KEA ++  +DF+ I   N    ++ +Q    +   +G   G+++ ISS++  I   PL    Y S+K A++ L K LA EW + +IRVN ++P  ++T     +++  R  +         P+ R  EP E++     L  P ASY+TG  + +DGG
Sbjct:   86 GPVTGLIANAGVSVVKEALQYNKDDFNKIFDVNVFGVFNCAQAMAQIWTDTGFQRGSVVIISSMSSQICNRPLTQCFYNSSKAAVSNLGKCLAAEWAEKSIRVNMLSPGYVKTDQTSHMDQKLRDFQ-----ADGVPLKRFAEPEEMAGQAILLLSPKASYMTGGEYFVDGG 252          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.820e-16
Identity = 56/182 (30.77%), Postives = 92/182 (50.55%), Query Frame = -3
Query:  252 RQKLMETVCSEFDGKLNILVNNAGTT-IPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 794
            R++L+ T   +  G ++ILV+NA          + T E +   +  N ++   +++   P ++  G G+++ +SS+      P  S Y  +K A+  LTK LA E    NIRVN +AP +I+TS    +  D    E     +    I R GEP + + +V+FLC   ASY+TG+   + GG
Sbjct:   78 RERLVATAV-KLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETL---RIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGG 255          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
NODG_RHIS32.163e-1632.94Nodulation protein G OS=Rhizobium sp. (strain N33)... [more]
STCU_EMENI2.826e-1632.11Versicolorin reductase OS=Emericella nidulans GN=s... [more]
SOU2_CANAL2.826e-1629.95Sorbose reductase homolog SOU2 OS=Candida albicans... [more]
PECR_RAT2.826e-1630.64Peroxisomal trans-2-enoyl-CoA reductase OS=Rattus ... [more]
DHRS4_RAT2.826e-1629.67Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
HSD_STREX3.690e-1631.153-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
FABG_CHLPN3.690e-1630.543-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
NODG_RHIME4.820e-1631.95Nodulation protein G OS=Rhizobium meliloti GN=nodG... [more]
MTDH_UROFA4.820e-1630.81Probable NADP-dependent mannitol dehydrogenase OS=... [more]
DHRS4_PONAB4.820e-1630.77Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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