CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.820e-16
Identity = 56/182 (30.77%), Postives = 92/182 (50.55%), Query Frame = -3
Query:  252 RQKLMETVCSEFDGKLNILVNNAGTT-IPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 794
            R++L+ T   +  G ++ILV+NA          + T E +   +  N ++   +++   P ++  G G+++ +SS+      P  S Y  +K A+  LTK LA E    NIRVN +AP +I+TS    +  D    E     +    I R GEP + + +V+FLC   ASY+TG+   + GG
Sbjct:   78 RERLVATAV-KLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETL---RIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGG 255          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: PHBB_ZOORA (Acetoacetyl-CoA reductase OS=Zoogloea ramigera GN=phbB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.295e-16
Identity = 50/168 (29.76%), Postives = 88/168 (52.38%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G +++LVNNAG T      + T + ++ ++ TN    ++++   +  ++    G I+ ISS+ G       + Y++ K      TK LA E     I VNA+ P  I T ++ +I +  +V+    R+IP+ P+ R GEP+E++ +V FL    A ++TG     +GG
Sbjct:   74 GPIDVLVNNAGITKDAMFHKMTPDQWNAVINTNLTGLFNMTHPVWSGMRDRSFGRIVNISSINGQKGQMGQANYSAAKAGDLGFTKALAQEGAAKGITVNAICPGYIGTEMVRAIPE--KVLNE--RIIPQIPVGRLGEPDEIARIVVFLASDEAGFITGSTISANGG 237          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: PHBB_RHIME (Acetoacetyl-CoA reductase OS=Rhizobium meliloti GN=phbB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.295e-16
Identity = 54/168 (32.14%), Postives = 86/168 (51.19%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G ++ILVNNAG T      + T E +  ++ TN    ++++   +  ++  G G I+ ISS+ G         Y++ K     LTK LA E     I VNA+ P  I T ++ ++ +  +V+    R+IP+ P+ R GEP EV+  V FL    A ++TG     +GG
Sbjct:   74 GPVDILVNNAGITRDAMFHKMTPEQWGEVIGTNLTGVFNMTHPLWSGMRDRGFGRIVNISSINGQKGQMGQVNYSAAKAGDLGLTKALAQEGAAKGITVNAICPGYIGTEMVRAVPE--KVLNE--RIIPQIPVGRLGEPEEVARCVVFLASDDAGFITGSTISANGG 237          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG6_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase (Fragments) OS=Brassica napus PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 6.295e-16
Identity = 56/175 (32.00%), Postives = 89/175 (50.86%), Query Frame = -3
Query:  243 EFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCL-PAASYVTGQVFCIDGGYSV 764
            ++ G+++++ NNAG T+               +  N    +  SQ A  ++     G II I+SV G+I     + YA+ K  +   +K  A E    NI VN V P  I + +   + +D   ME   +++   P+ R G+P +V+ +V FL L PAASY+TGQ F IDGG ++
Sbjct:   47 DYWGQIDVIANNAGITV---------------IALNLTGVFLCSQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASEMTAKLGED---ME--KKILGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQTFTIDGGIAI 201          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: PECR_CAVPO (Peroxisomal trans-2-enoyl-CoA reductase OS=Cavia porcellus GN=PECR PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 54/174 (31.03%), Postives = 89/174 (51.15%), Query Frame = -3
Query:  243 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAY-PLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWII--RTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 755
            GK++ LVNN G          + + +  ++ TN    +++ + AY   +K  G   +  I  + G    P  +   + +G +  LTK+LA  W +  IR+N VAP  +  +T++ +  +    +   A + IP     R G P EVSS+V FL  PAAS++TGQ+  +DGG S+
Sbjct:   99 GKIDFLVNNGGGQFWSSPEHISSKGWHAVIETNLTGTFYMCKAAYNSWMKEHGGAIVNIIILLNGQ---PFVAHSGAARGGVYNLTKSLALGWARSGIRINCVAPGTVYSQTAMDNYGDMGKTLFADAFQKIPAK---RLGVPEEVSSLVCFLLSPAASFITGQLVNVDGGQSL 266          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHK2_STRVN (Granaticin polyketide synthase putative ketoacyl reductase 2 OS=Streptomyces violaceoruber GN=gra-orf6 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 63/183 (34.43%), Postives = 94/183 (51.37%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTT--IPK-EATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            ++L++T    + G+L++LVNNAG T  IP  +    T E +  I+  N    +  +  A P L  SGNG+++ +SS+ G         YA + G     T+ LA   G   +RVNAVAP +I T    + +    + EH  +    TP+ R G P +V+  V  L L  A+Y TGQV  +DGG
Sbjct:   70 RRLVDTAVEHY-GRLDVLVNNAGRTRAIPHADLAAATPEVWREILGLNVIGTWQTTVAAMPHLARSGNGSVVNVSSIAGSRPAGSSIPYAVSNGGHRAQTRLLANTVGPA-VRVNAVAPGLIETPWTQNSDFFAPIAEHVRQ---TTPLRRTGRPEDVAEAV--LGLVRATYTTGQVLLVDGG 245          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHB14_HUMAN (17-beta-hydroxysteroid dehydrogenase 14 OS=Homo sapiens GN=HSD17B14 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 60/172 (34.88%), Postives = 88/172 (51.16%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTM-EDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSL---IDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G+L+ +VNNAG   P +  E T  + F  ++  N    Y L++LA P L+ S  GN+I ISS+ G I       Y +TKGA+  +TK LA +     +RVN ++P  I T L   + ++  DPR       L    P+ R G+P EV +   FL    A++ TG    + GG
Sbjct:   81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRATIREGML--AQPLGRMGQPAEVGAAAVFLA-SEANFCTGIELLVTGG 248          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DCXR_RAT (L-xylulose reductase OS=Rattus norvegicus GN=Dcxr PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 56/170 (32.94%), Postives = 84/170 (49.41%), Query Frame = -3
Query:  249 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 755
            G +++LVNNA     +   E T E   T    NF +   +SQ+    + A G  G I+ +SS     A+   ++Y STKGA++ LTK +A E G   IRVNAV P ++ T +  +   DP     A  ++ R P+ +  E   V   + FL    +S  TG    +DGG+
Sbjct:   75 GPVDLLVNNAAVATLQPFLEVTKEACDTSFNVNFRAVVQVSQIVARGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTPMGRANWSDP---HKAKVMLDRIPLGKFAEVENVVDTILFLLSNRSSMTTGSALPVDGGF 241          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: CMTB_PSEPU (2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase OS=Pseudomonas putida GN=cmtB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 58/169 (34.32%), Postives = 88/169 (52.07%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK-DPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G + ILVN AG  + +   E T E     +  N  +A   S++  P + A   G II I + +    +P  + Y + KG M+ LT  LA E+ +  + VN VAP  + T +   I+  +P   E A R +   P+ R GE  EV+S+V +L  P A++VTGQV  ++GG
Sbjct:   90 GSVQILVNCAGGGVIRPFLEHTPETLKATIDRNLWTALWCSRVFLPDMLARQYGRIINIGADSVRNGLPDHAAYNAAKGGMHGLTTGLAREFARQGVTVNTVAPCAVNTEVWVRIKNANP---ELAQRFLDVIPMGRVGEIEEVASMVGYLAQPEAAFVTGQVISVNGG 255          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: CMTB_PSEP1 (2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=cmtB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 58/169 (34.32%), Postives = 88/169 (52.07%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK-DPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G + ILVN AG  + +   E T E     +  N  +A   S++  P + A   G II I + +    +P  + Y + KG M+ LT  LA E+ +  + VN VAP  + T +   I+  +P   E A R +   P+ R GE  EV+S+V +L  P A++VTGQV  ++GG
Sbjct:   90 GSVQILVNCAGGGVIRPFLEHTPETLKATIDRNLWTALWCSRVFLPDMLARQYGRIINIGADSVRNGLPDHAAYNAAKGGMHGLTTGLAREFARQGVTVNTVAPCAVNTEVWVRIKNANP---ELAQRFLDVIPMGRVGEIEEVASMVGYLAQPEAAFVTGQVISVNGG 255          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
DHRS4_HUMAN4.820e-1630.77Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
PHBB_ZOORA6.295e-1629.76Acetoacetyl-CoA reductase OS=Zoogloea ramigera GN=... [more]
PHBB_RHIME6.295e-1632.14Acetoacetyl-CoA reductase OS=Rhizobium meliloti GN... [more]
FABG6_BRANA6.295e-1632.003-oxoacyl-[acyl-carrier-protein] reductase (Fragme... [more]
PECR_CAVPO8.221e-1631.03Peroxisomal trans-2-enoyl-CoA reductase OS=Cavia p... [more]
DHK2_STRVN8.221e-1634.43Granaticin polyketide synthase putative ketoacyl r... [more]
DHB14_HUMAN8.221e-1634.8817-beta-hydroxysteroid dehydrogenase 14 OS=Homo sa... [more]
DCXR_RAT8.221e-1632.94L-xylulose reductase OS=Rattus norvegicus GN=Dcxr ... [more]
CMTB_PSEPU8.221e-1634.322,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase O... [more]
CMTB_PSEP18.221e-1634.322,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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