CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: BDHA_RHIME (D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium meliloti GN=bdhA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 54/187 (28.88%), Postives = 91/187 (48.66%), Query Frame = -3
Query:  246 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEP-------NEVSSVVAFLCLPAASYVTGQVFCIDGGYS 785
            +M  V   F G  +ILVNNAG    ++  +F +E +  I+  N  S++H  + A P +K  G G II I+S  G++A P  S Y + K  +  LTK +A E  +  + VN++ P  + T L++    D       +       +   G+P        +V+S+  +L    A+ +TG    +DGG++
Sbjct:   71 MMAMVADRFGGA-DILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGGWT 256          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG5_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 5, chloroplastic (Fragment) OS=Brassica napus GN=bkr1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.402e-15
Identity = 55/182 (30.22%), Postives = 92/182 (50.55%), Query Frame = -3
Query:  243 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCL-PAASYVTGQVFCIDGGYSV 785
            +M+T   ++ G ++++VNNAG T            +  ++  N    +  +Q A  ++     G II I+SV G+I     + YA+ K  +   +K  A E    NI VN V P  I + +   + +D   ME   +++   P+ R G+P  V+ +V FL L PA+SY+TG  F I GG+++
Sbjct:  142 MMKTAVDKW-GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED---ME--KKILGTIPLGRYGQPEYVAGLVEFLALSPASSYITGHTFSIHGGFAI 317          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHRS4_PIG (Dehydrogenase/reductase SDR family member 4 OS=Sus scrofa GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.402e-15
Identity = 53/169 (31.36%), Postives = 86/169 (50.89%), Query Frame = -3
Query:  252 GKLNILVNNAGTT-IPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G ++ILV+NA          + T E +  I+  N ++   +++   P ++  G G+++ +SSV      P    Y  +K A+  LTKNLA E    NIRVN +AP +I+T+    +  D    E+    +    I R G P + + +V+FLC   ASY+TG+   + GG
Sbjct:   90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESL---RIRRLGNPEDCAGIVSFLCSEDASYITGETVVVGGG 255          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: HCDS_XANP2 (2-(S)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecE PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 53/172 (30.81%), Postives = 83/172 (48.26%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTS----LIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G L  LVNNAG           +E +S IM  N    +  S+ A   +   G G I+   SV G++ +P  + Y + KGA+  LT+ +A ++    IRVN V P  +  +     +   + DP   E  +R + + P+ R G P +++    FL    A++VTG V  +DGG
Sbjct:   77 GPLTGLVNNAGIAGFGSVHATEVETWSRIMAVNVTGTFLASKAALFGMLERGRGAIVNFGSVAGLVGIPTMAAYCAAKGAVVNLTRQMAADYSGRGIRVNVVCPGTVAGTDMGRQLLGTDCDP---ELEARRLAKYPMGRFGTPEDIAEAAVFLLSTKAAFVTGSVLAVDGG 245          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_MYCS2 (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium smegmatis GN=fabG PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = -3
Query:  252 EFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 764
            E  G + +LV NAG +        T E F  ++ TN   A+  +Q A   ++    G IIFI SV+G+  +   + YA+ K  +  + ++++ E  K  +  N VAP  I T +  ++  D R+   A   I   P  R G   EV+  V+FL    ASY+ G V  +DGG
Sbjct:   85 EHQGPVEVLVANAGISKDAFLMRMTEERFEEVINTNLTGAFRCAQRASRTMQRKRFGRIIFIGSVSGMWGIGNQANYAAAKAGLIGMARSISRELAKAGVTANVVAPGYIDTEMTRAL--DERIQAGALDFI---PAKRVGTAEEVAGAVSFLASEDASYIAGAVIPVDGG 250          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_BUCBP (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=fabG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 52/179 (29.05%), Postives = 93/179 (51.96%), Query Frame = -3
Query:  252 KLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 788
            K M+ V   F G+++IL+NNAG    K       +D+++++  N  S +++S+     +  +  G II I SV   I     + Y++ K  +    K+LA E     I VN +AP +I+T + +++ +     +  S+ + + P+ R G   E+S +  FL    A+Y+TGQV  ++GG
Sbjct:   69 KTMDFVYKNF-GRVDILINNAGIIRDKLLINMKTQDWNSVLNVNLNSIFYMSKSVIRNMIKNKQGKIITIGSVIAHIGNCGQTNYSAAKLGLVGFHKSLALELAPKGITVNMIAPGLIKTGMTNNLSQ-----KQLSKYLSKIPMKRLGTIKEISKITLFLISNDANYITGQVIHVNGG 241          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DCXR_MOUSE (L-xylulose reductase OS=Mus musculus GN=Dcxr PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 54/170 (31.76%), Postives = 83/170 (48.82%), Query Frame = -3
Query:  249 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 755
            G +++LVNNA   + +   E T E   T    N  +   +SQ+    + A G  G I+ +SS     A+   ++Y STKGA++ LTK +A E G   IRVNAV P ++ T +  +   DP     A  ++ R P+ +  E   V   + FL    +   TG    +DGG+
Sbjct:   75 GPVDLLVNNAAVALLQPFLEVTKEACDTSFNVNLRAVIQVSQIVAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKMMALELGPHKIRVNAVNPTVVMTPMGRTNWSDP---HKAKAMLDRIPLGKFAEVENVVDTILFLLSNRSGMTTGSTLPVDGGF 241          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: PHAB_ACISR (Acetoacetyl-CoA reductase OS=Acinetobacter sp. (strain RA3849) GN=phaB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.392e-15
Identity = 51/178 (28.65%), Postives = 94/178 (52.81%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            + E + +E  G++++LVNNAG T      + + E +S ++ TN ++ + ++Q  +  +    +G I+ ISSV G+      + Y+++K  +   TK LA E  + NI VN VAP    T ++ ++ +D         +  + P+ R   P E+++ V +L     +YVTG+   I+GG
Sbjct:   74 IQEAIAAE--GRVDVLVNNAGITRDATFKKMSYEQWSQVIDTNLKTLFTVTQPVFNKMLEQKSGRIVNISSVNGLKGQFGQANYSASKAGIIGFTKALAQEGARSNICVNVVAPGYTATPMVTAMREDV-----IKSIEAQIPLQRLAAPAEIAAAVMYLVSEHGAYVTGETLSINGG 244          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: PECR_MOUSE (Peroxisomal trans-2-enoyl-CoA reductase OS=Mus musculus GN=Pecr PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.392e-15
Identity = 54/173 (31.21%), Postives = 85/173 (49.13%), Query Frame = -3
Query:  243 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWII--RTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 755
            GK+N LVNN G        + T + +  ++ TN    +++ +  Y        G+I+ I  +            A+ +G  N LTK++A  W    +R+N VAP  I  +T++ +  E    + E A   IP     R G P E+S +V FL  PAASY+TGQ+  +DGG ++
Sbjct:   99 GKINFLVNNGGGQFMAPVEDITAKGWHAVIETNLTGTFYMCKEVYNSWMREHGGSIVNIIVLLNNGFPTAAHTGAAREGVYN-LTKSMALAWASSGVRINCVAPGTIYSQTAVDNYGEMGQTLFEMAFDSIPAK---RLGVPEEISPLVCFLLSPAASYITGQLINVDGGQAL 267          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: BAIA1_EUBSP (Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (strain VPI 12708) GN=baiA1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.392e-15
Identity = 54/176 (30.68%), Postives = 90/176 (51.14%), Query Frame = -3
Query:  249 TVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 776
            TV  ++ G+L++++NNAG T+    +  + EDF  IM  N    ++ +  AY  +K +  G II  +SVTG+        Y ++K  +  LT  L  E  + NIRV  VAP ++ T +   +   P ++E   + +   P+ R  +P E+++V  FL    AS +T     +DG Y
Sbjct:   78 TVAQKY-GRLDVMINNAGITMNSVFSRVSEEDFKNIMDINVNGVFNGAWSAYQCMKDAKQGVIINTASVTGIYGSLSGIGYPTSKAGVIGLTHGLGREIIRKNIRVVGVAPGVVDTDMTKGL--PPEILEDYLKTL---PMKRMLKPEEIANVYLFLASDLASGITATTISVDGAY 247          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
BDHA_RHIME8.221e-1628.88D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium ... [more]
FABG5_BRANA1.402e-1530.223-oxoacyl-[acyl-carrier-protein] reductase 5, chlo... [more]
DHRS4_PIG1.402e-1531.36Dehydrogenase/reductase SDR family member 4 OS=Sus... [more]
HCDS_XANP21.831e-1530.812-(S)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]
FABG_MYCS21.831e-1531.583-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
FABG_BUCBP1.831e-1529.053-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]
DCXR_MOUSE1.831e-1531.76L-xylulose reductase OS=Mus musculus GN=Dcxr PE=2 ... [more]
PHAB_ACISR2.392e-1528.65Acetoacetyl-CoA reductase OS=Acinetobacter sp. (st... [more]
PECR_MOUSE2.392e-1531.21Peroxisomal trans-2-enoyl-CoA reductase OS=Mus mus... [more]
BAIA1_EUBSP2.392e-1530.68Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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