CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHRS4_MOUSE (Dehydrogenase/reductase SDR family member 4 OS=Mus musculus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15
Identity = 54/182 (29.67%), Postives = 90/182 (49.45%), Query Frame = -3
Query:  252 RQKLMETVCSEFDGKLNILVNNAGTT-IPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 794
            R+KL+ T      G ++ILV+NA          + T E +  +++ N  +   + +   P ++  G G+++ + SV G    P    Y  +K A+  LTKN A E    NIRVN +AP +I+T    S+  + +  E   +      I R G+P + + +V+FLC   ASY+ G+   + GG
Sbjct:   78 REKLITTALKRHRG-IDILVSNAAVNPFFGNLMDVTEEVWDKVLSINVTATAMMIKAVVPEMEKRGGGSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTR-FSSVLWEEKAREDFIK--EAMQIRRLGKPEDCAGIVSFLCSEDASYINGETVVVGGG 255          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHB14_BOVIN (17-beta-hydroxysteroid dehydrogenase 14 OS=Bos taurus GN=HSD17B14 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15
Identity = 59/172 (34.30%), Postives = 88/172 (51.16%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTM-EDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI---EKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G+L+ +VNNAG   P +  E T  + F  ++  N    Y L++LA P L+ S  GN+I ISS+ G I       Y +TKGA+  +TK LA +  +  +RVN ++P  I T L + +     DP        L    P+ R G+P EV++   FL    A++ TG    + GG
Sbjct:   81 GRLDCIVNNAGYHPPPQWPEETSAQGFRQLLELNLLGTYTLTKLALPHLRKS-RGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQYGVRVNCISPGNIWTPLWEELAASTPDPTATIREGTL--AQPLGRMGQPAEVAAAAVFLA-SEATFCTGTELLVTGG 248          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DECR2_PONAB (Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abelii GN=DECR2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15
Identity = 52/168 (30.95%), Postives = 83/168 (49.40%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G+++IL+N A       A   +   F T+M  +    +++S++ Y        G I+ I++  G     L     S K A++ +T++LA EWG  NIRVN++AP  I  S  + + +        S  +  +P+ R G   E++  V +L  P ASYVTG V   DGG
Sbjct:  105 GRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPI--SGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGG 270          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DECR2_HUMAN (Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapiens GN=DECR2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15
Identity = 52/168 (30.95%), Postives = 83/168 (49.40%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G+++IL+N A       A   +   F T+M  +    +++S++ Y        G I+ I++  G     L     S K A++ +T++LA EWG  NIRVN++AP  I  S  + + +        S  +  +P+ R G   E++  V +L  P ASYVTG V   DGG
Sbjct:  105 GRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPI--SGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGG 270          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: BAIA2_EUBSP (Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (strain VPI 12708) GN=baiA2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15
Identity = 53/169 (31.36%), Postives = 86/169 (50.89%), Query Frame = -3
Query:  249 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 755
            G+L++++NNAG T     +  + E+F  IM  N    ++ +  AY  +K +  G II  +SVTG+        Y ++K ++  LT  L  E  + NIRV  VAP ++ T + +     P +ME   + +   P+ R  EP E+++V  FL    AS +T     +DG Y
Sbjct:   84 GRLDVMINNAGITSNNVFSRVSEEEFKHIMDINVTGVFNGAWCAYQCMKDAKKGVIINTASVTGIFGSLSGVGYPASKASVIGLTHGLGREIIRKNIRVVGVAPGVVNTDMTNG--NPPEIMEGYLKAL---PMKRMLEPEEIANVYLFLASDLASGITATTVSVDGAY 247          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_MYCAV (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium avium GN=fabG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.080e-15
Identity = 53/175 (30.29%), Postives = 85/175 (48.57%), Query Frame = -3
Query:  252 TVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 776
            T   E  G + +LV+NAG +        T E F+ ++  N   A+ ++Q A   ++    G II+I SV+G+  +   + YA+ K  +  + ++++ E  K  +  N VAP  I T +  ++  D R+   A   I   P  R G   EV   V+FL    ASY+ G V  +DGG
Sbjct:   81 TEVEEHQGPVEVLVSNAGISKDAFLIRMTEERFTEVINANLTGAFRVTQRAARSMQKKRFGRIIYIGSVSGMWGIGNQANYAAAKAGLIGMARSISRELSKAGVTANVVAPGYIDTEMTRAL--DERIQAGALEFI---PAKRVGTAAEVPGAVSFLASEDASYIAGAVIPVDGG 250          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: VER1_ASPPA (Versicolorin reductase OS=Aspergillus parasiticus GN=ver1 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.329e-15
Identity = 59/190 (31.05%), Postives = 98/190 (51.58%), Query Frame = -3
Query:  252 KLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVI-AVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK----------DPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 788
            KLM      F G L+I+ +NAG        + T E+F  +   N    + +++ AY  ++  G   II  SS T  +  VP  ++Y+ +KGA++   + +A + G   I VNAVAP  I+T +  ++ +          D +V E A+ L   +P+ R G P +V+ VV+FL    A +V+G++  +DGG
Sbjct:   76 KLMAETVRHF-GYLDIVSSNAGIVSFGHLKDVTPEEFDRVFRVNTRGQFFVAREAYRHMREGGR--IILTSSNTACVKGVPKHAVYSGSKGAIDTFVRCMAIDCGDKKITVNAVAPGAIKTDMFLAVSREYIPNGETFTDEQVDECAAWL---SPLNRVGLPVDVARVVSFLASDTAEWVSGKIIGVDGG 259          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_PSEAE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Pseudomonas aeruginosa GN=fabG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.329e-15
Identity = 55/168 (32.74%), Postives = 82/168 (48.81%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G+  I+VNNAG T          +++  ++ TN  S Y LS+     +  +  G II I SV G +     + YA+ K  +   T+ LA E G   I VNAVAP  I T +   + +  R       L+ + P+ R G+  E++ VV FL    A+YVTG    ++GG
Sbjct:   81 GQPLIVVNNAGITRDNLLVRMKDDEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQR-----EALLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGG 243          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DECR2_DANRE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rerio GN=decr2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.329e-15
Identity = 53/168 (31.55%), Postives = 79/168 (47.02%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G+++IL+NNA       AT  +   F T+M  +    ++ S++ Y        G+I+ IS+  G     L     S K A + +T++LA EWG   +RVN VAP  I  S  +   +        +      P+ R G   E++  V FL   A+SYVTG V   DGG
Sbjct:  112 GRVDILINNAAGNFLCPATSLSFNAFKTVMEIDTMGTFNTSKVIYDKWFKDHGGSIVNISATLGYRGQALQVHAGSAKAANDAMTRHLAVEWGPSGVRVNTVAPGPI--SGTEGYRRLGGSHAETAGAFHSIPLQRAGNKTEMAHAVLFLASRASSYVTGSVLVADGG 277          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHB8_MOUSE (Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus GN=Hsd17b8 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 54/181 (29.83%), Postives = 96/181 (53.04%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLA-YPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            ++L+E V + F    +++V+ AG T  +     + ED+  ++  N +  + ++Q A   L+ + G G+II ISS+ G +     + YAS+K  +  LT+  A E G+  IR N+V P  I T +   + +  +V +  + +I   P+   G+P +V+ VVAFL    + Y+TG    + GG
Sbjct:   82 RRLLEEVQACFSRPPSVVVSCAGITRDEFLLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIIGKVGNIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKMPE--KVKDKVTAMI---PLGHMGDPEDVADVVAFLASEDSGYITGASVEVSGG 257          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
DHRS4_MOUSE3.124e-1529.67Dehydrogenase/reductase SDR family member 4 OS=Mus... [more]
DHB14_BOVIN3.124e-1534.3017-beta-hydroxysteroid dehydrogenase 14 OS=Bos tau... [more]
DECR2_PONAB3.124e-1530.95Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abe... [more]
DECR2_HUMAN3.124e-1530.95Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapi... [more]
BAIA2_EUBSP3.124e-1531.36Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (st... [more]
FABG_MYCAV4.080e-1530.293-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
VER1_ASPPA5.329e-1531.05Versicolorin reductase OS=Aspergillus parasiticus ... [more]
FABG_PSEAE5.329e-1532.743-oxoacyl-[acyl-carrier-protein] reductase OS=Pseu... [more]
DECR2_DANRE5.329e-1531.55Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rer... [more]
DHB8_MOUSE9.090e-1529.83Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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