CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: YF3H_SCHPO (Uncharacterized oxidoreductase C22A12.17c OS=Schizosaccharomyces pombe GN=SPAC22A12.17c PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 52/171 (30.41%), Postives = 88/171 (51.46%), Query Frame = -3
Query:  246 LNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIA-VP--LCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYS 749
            ++I+V N G    K A + T E+F+  +  N    ++++  A P+ +  G+G+++  +S++GV+  VP   C+ Y ++K  + QL K+LA EW K   RVN V+P    + +           +      P TP  R G   E++S   +L   AASY +G    +DGGY+
Sbjct:   99 IDIVVPNNGICTGKSAIDMTYEEFANEINVNLLGVFNVAHNAGPIFQKQGHGSLVATASMSGVVVNVPQQQCA-YNTSKAGVIQLIKSLAVEWRK-FARVNCVSPGYTTSDMTGG--------KFHKEWEPYTPFERNGLAKEIASAYLYLASDAASYASGTNLIVDGGYT 259          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: LINX_PSEPA (2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase OS=Pseudomonas paucimobilis GN=linX PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.695e-14
Identity = 53/171 (30.99%), Postives = 89/171 (52.05%), Query Frame = -3
Query:  243 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 755
            G L  L N AG   P    E ++E ++ ++  N  + +   + A P L  SGNG+II ISS+ G+      + Y +TK A+  ++K  A E+    +RVN + P  + T +  ++   P V++  +  I   P+ + G+P ++++   FL    A Y+TG    IDGG+SV
Sbjct:   83 GGLTTLSNTAGIIHPGGFEEESIEGWNKMVAVNQTAIFLGIKAAIPELVKSGNGSIINISSLIGMFPTAGNASYCATKAAVRIMSKAAALEFVDRGVRVNTIVPGGMNTPITANV--PPDVLKQQTSQI---PMGKLGDPIDIANGALFLASDEAKYITGVDLPIDGGWSV 248          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: BUTA_STAES (Acetoin(diacetyl) reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=butA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.695e-14
Identity = 50/189 (26.46%), Postives = 93/189 (49.21%), Query Frame = -3
Query:  252 RQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTN-FESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRL-------IPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 794
            +++L++   +EF G+L+++VNNAG        E   E+ S +   N F + + +   A   +K    G II   S+ G  +  +   Y++TK ++   T+  A E     I VNA  P + +T + D I+++   ++ +  +            + R  EP++V+++V+FL    + Y+TGQ    DGG
Sbjct:   66 QEELVQFAVTEF-GQLDVMVNNAGVDAVTPILEIGEEELSKLFNINVFGTLFGIQAAANQFIKQKSKGKIINACSIAGHESYEVLGTYSATKHSVRSFTQTAAKELADKGITVNAYCPGVAKTEMWDRIDEEMVKLDDSLEIGDAFEAFSSEIKLGRYQEPSDVANLVSFLASNDSDYITGQSILTDGG 253          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: BUTA_STAEQ (Acetoin(diacetyl) reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=butA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.695e-14
Identity = 50/189 (26.46%), Postives = 93/189 (49.21%), Query Frame = -3
Query:  252 RQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTN-FESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRL-------IPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 794
            +++L++   +EF G+L+++VNNAG        E   E+ S +   N F + + +   A   +K    G II   S+ G  +  +   Y++TK ++   T+  A E     I VNA  P + +T + D I+++   ++ +  +            + R  EP++V+++V+FL    + Y+TGQ    DGG
Sbjct:   66 QEELVQFAVTEF-GQLDVMVNNAGVDAVTPILEIGEEELSKLFNINVFGTLFGIQAAANQFIKQKSKGKIINACSIAGHESYEVLGTYSATKHSVRSFTQTAAKELADKGITVNAYCPGVAKTEMWDRIDEEMVKLDDSLEIGDAFEAFSSEIKLGRYQEPSDVANLVSFLASNDSDYITGQSILTDGG 253          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: YAY8_SCHPO (Uncharacterized oxidoreductase C4H3.08 OS=Schizosaccharomyces pombe GN=SPAC4H3.08 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 53/173 (30.64%), Postives = 86/173 (49.71%), Query Frame = -3
Query:  240 GKLNILVNN-AGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVN 755
            G +++LVNN A   + +   +   E +     TN  S + +++ A   +K+  +  I+  SS+   +  P    Y STKGA+   T+ L+ ++ +  IRVNAVAP  I T L+ S     ++      L  + P+ R G+P EV+S   FL      Y+TGQ    +GG  +N
Sbjct:  120 GWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAAISHMKSGSS--IVNCSSINAYVGRPDLLDYTSTKGAITAFTRGLSNQYAQHGIRVNAVAPGPIYTPLVSSTFPKEKI-----ELSDQVPLGRMGQPVEVASCYLFLACSDGGYMTGQTLHPNGGTVIN 285          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHB8_HUMAN (Estradiol 17-beta-dehydrogenase 8 OS=Homo sapiens GN=HSD17B8 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 52/179 (29.05%), Postives = 95/179 (53.07%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            L+E V + F    +++V+ AG T  +     + +D+  ++  N +  + ++Q A   L ++G  G+II ISS+ G +     + YA++K  +  LT+  A E G+  IR N+V P  I T +   + +  +V++  + +IP   +   G+P +V+ VVAFL    + Y+TG    + GG
Sbjct:   85 LLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQ--KVVDKITEMIPMGHL---GDPEDVADVVAFLASEDSGYITGTSVEVTGG 258          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: SOU1_CANAL (Sorbose reductase SOU1 OS=Candida albicans GN=SOU1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 54/185 (29.19%), Postives = 92/185 (49.73%), Query Frame = -3
Query:  246 KLMETVCSEFDGKLNILVNNAGT--TIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIA-VP-LCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYS 788
            K++  +  +F G ++I V NAG   T   E      + +  I+  +    Y+ +     + K + +G++I  SS++G I  +P L + Y + K A   L K+L+ EW     RVN+++P  I T + D    DP + +   +L   TP+ R G P E+     +L   A++Y TG    +DGGY+
Sbjct:  101 KVINEIEKDF-GTIDIFVANAGVAWTDGPEIDVQGYDQWKKIVDCDLNGVYYCAHTVGQIFKKNKSGSLIITSSMSGTIVNIPQLQAPYNAAKAACTHLAKSLSVEWASFGARVNSISPGYILTDIADFA--DPEMKKKWWQL---TPLGREGLPQELVGAYLYLASNASTYTTGSNIAVDGGYT 279          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: PHBB_CHRVI (Acetoacetyl-CoA reductase OS=Chromatium vinosum GN=phbB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 47/168 (27.98%), Postives = 84/168 (50.00%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G ++ILVN AG T  K   +     +  ++  N  S +++++  +  +   G G II ISSV G       + Y++ K  M+  T  LA E     + VN ++P  + T++  ++  D R     + +I   P+ R  +PNE+++ +AFL    + Y+TG    ++GG
Sbjct:   80 GPIDILVNCAGITRDKTFKKMEQAHWEAVINVNLNSVFNVTRQVWDGMLERGFGRIINISSVNGQRGQFGQANYSAAKAGMHGFTMALAQEGASKGVTVNTISPGYVETAMTLAMNDDVR-----NSIISGIPMRRMAQPNEIAAAIAFLAGDESGYMTGANLPVNGG 242          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: CBR4_XENTR (Carbonyl reductase family member 4 OS=Xenopus tropicalis GN=cbr4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 54/168 (32.14%), Postives = 79/168 (47.02%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G ++ LVN+AG            ED  ++++ N        +LA   +     G I+ I S+ G       SIY ++K  +   +K+LA E  K NIRVN VAP  I T +   +E+D         L    P+ R G+P EV+  V FL    + Y+TG V  +DGG
Sbjct:   74 GNVDYLVNSAGIRRDALLLRTRSEDIRSLLSVNLVGTIQTCKLALRSMIQQQGGAIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIHTDMTLGLEED--------SLTKMVPLGRFGDPEEVAQSVLFLL--ESPYITGHVLVVDGG 231          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: YHXC_BACSU (Uncharacterized oxidoreductase yhxC OS=Bacillus subtilis GN=yhxC PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 61/189 (32.28%), Postives = 92/189 (48.68%), Query Frame = -3
Query:  237 ETVCSEFDGK-------LNILVNNAGTTIPKEATE-FTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVNG 779
            E  C++  G+       ++ILVNNA     + + E  T         TN  S ++L++   P LK   +  II  +S+T          Y++TKGA+   T++L+    +  IRVNAVAP  I T LI +      V    S +    P+ RPG+P EV+    +L    ++YVTGQ   ++GG  VNG
Sbjct:  103 EAFCNDVVGQASQVFPSIDILVNNAAEQHVQPSIEKITSHQLIRTFQTNIFSMFYLTKAVLPHLKKGSS--IINTASITAYKGNKTLIDYSATKGAIVTFTRSLSQSLVQQGIRVNAVAPGPIWTPLIPASFAAKDVEVFGSDV----PMERPGQPVEVAPSYLYLASDDSTYVTGQTIHVNGGTIVNG 285          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
YF3H_SCHPO4.511e-1430.41Uncharacterized oxidoreductase C22A12.17c OS=Schiz... [more]
LINX_PSEPA7.695e-1430.992,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydroge... [more]
BUTA_STAES7.695e-1426.46Acetoin(diacetyl) reductase OS=Staphylococcus epid... [more]
BUTA_STAEQ7.695e-1426.46Acetoin(diacetyl) reductase OS=Staphylococcus epid... [more]
YAY8_SCHPO1.005e-1330.64Uncharacterized oxidoreductase C4H3.08 OS=Schizosa... [more]
DHB8_HUMAN1.005e-1329.05Estradiol 17-beta-dehydrogenase 8 OS=Homo sapiens ... [more]
SOU1_CANAL2.239e-1329.19Sorbose reductase SOU1 OS=Candida albicans GN=SOU1... [more]
PHBB_CHRVI2.239e-1327.98Acetoacetyl-CoA reductase OS=Chromatium vinosum GN... [more]
CBR4_XENTR2.239e-1332.14Carbonyl reductase family member 4 OS=Xenopus trop... [more]
YHXC_BACSU2.924e-1332.28Uncharacterized oxidoreductase yhxC OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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