CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: MTDH_CLAHE (Probable NADP-dependent mannitol dehydrogenase OS=Cladosporium herbarum PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 48/184 (26.09%), Postives = 93/184 (50.54%), Query Frame = -3
Query:  246 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIA--VPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYS 791
            +KL++ V ++F G+++  + NAG T      + ++E ++ ++  +    +H ++      K  G G+++  +S++G IA      + Y   K     + ++LA EW +D  RVN+++P  I T L D + K+ + + H+       P+ R G   E+     +    A++Y TG    IDGGY+
Sbjct:   89 EKLVKDVVADF-GQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEW-RDFARVNSISPGYIDTGLSDFVPKETQQLWHSM-----IPMGRDGLAKELKGAYVYFASDASTYTTGADLLIDGGYT 265          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_BUCAP (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=fabG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 50/177 (28.25%), Postives = 89/177 (50.28%), Query Frame = -3
Query:  252 METVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 782
            M+ +C +    ++IL+NNAG T        + +++  ++  N  S +++S+     +     G I+ I SV G +       Y+++K  +    K+LA E  +  I VN V+P  I+T+L     K+  V ++   L  + P+ R G   E+++ V FL    ASY+TGQ   ++GG
Sbjct:   70 MKEICQK-KYSIDILINNAGITSDNLLVYMSNKEWENVIKINLTSVFYMSKSVIRSMIKKRYGRIVTIGSVIGYLGNRGQINYSASKSGLIGFHKSLALEVAQKGITVNIVSPGFIKTNLT----KNLNVFQYKKHL-SKIPMKRIGTAEEIANAVIFLSSEKASYITGQTIHVNGG 240          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHB8_CANFA (Estradiol 17-beta-dehydrogenase 8 OS=Canis familiaris GN=HSD17B8 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13
Identity = 51/181 (28.18%), Postives = 95/181 (52.49%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            ++L+E V + F    +++V+ AG T  +     + +D+  ++  N +  + ++Q A   L +SG  G+II ISS+ G +     + YA++K  +  LT+  A E G+  IR N+V P  I T +   + +  +V++   ++I   P+   G+P +V+  V FL    + Y+TG    + GG
Sbjct:   81 RRLLEQVQACFSRPPSVVVSCAGLTRDEFLLRMSEDDWDRVIAVNLKGIFLVTQAAAQALVSSGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFITTPMTQKVPQ--KVLD---KVIGMIPMGHLGDPEDVADAVTFLASEDSGYITGASVEVTGG 256          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: CBR4_DANRE (Carbonyl reductase family member 4 OS=Danio rerio GN=cbr4 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13
Identity = 59/180 (32.78%), Postives = 89/180 (49.44%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            QK  ET+ ++  G +  LVN AG            ED  +++ TN   +    + A   + + G G I+ I SV GV       +Y+++K  +   T++LA E    NIRVN VAP +I T +   + +     E A R I   P+ R GEP EV+  + FL    + Y+TGQ+  +DGG
Sbjct:   65 QKAFETI-NKTCGTVGFLVNAAGINRDALLLRSKSEDMLSVLHTNLLGSMLTCKAAVRNMLSHG-GAIVNIGSVVGVKGNAGQCVYSASKAGLEGFTRSLAKEVASRNIRVNLVAPGLIHTDMTAGLAE-----EAAVRTI---PLGRFGEPAEVAQAMLFLL--ESPYITGQILLVDGG 232          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: BDH2_BOVIN (3-hydroxybutyrate dehydrogenase type 2 OS=Bos taurus GN=BDH2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13
Identity = 55/173 (31.79%), Postives = 86/173 (49.71%), Query Frame = -3
Query:  243 KLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVI--AVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRT-SLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 752
            +L++L N AG        +    D+   M  N  S Y + +   P + A  +GNII +SSV   I   V  C +Y++TK A+  LTK++A ++ +  IR N V P  + T SL + I+  P   E  S  + R    R     EV+ +  +L    ++Y+TG    IDGG+S+
Sbjct:   74 RLDVLFNVAGFVHHGTILDCEETDWDFSMNLNVRSMYLMIKAFLPKMMAQKSGNIINMSSVASSIKGVVNRC-VYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARPNPEEALSDFLKRQKTGRFATAEEVALLCVYLASDESAYITGNPVIIDGGWSL 245          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: YXJF_BACSU (Uncharacterized oxidoreductase yxjF OS=Bacillus subtilis GN=yxjF PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 55/179 (30.73%), Postives = 80/179 (44.69%), Query Frame = -3
Query:  246 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKD---------PRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYS 755
            G+L+ILVNNAG        EF  + F  ++     + +   +  +P++K    G II I+SV G++     S Y S K  +  LTK  A E     I VNA+ P  + T L+ +   D           V+E    + P  P  R     E++    FL    A  VTGQ   +DGGY+
Sbjct:   79 GRLDILVNNAGIQHVAPIEEFPTDTFEQLIKVMLTAPFIAMKHVFPIMKKQQFGRIINIASVNGLVGFAGKSAYNSAKHGVIGLTKVGALEGAPHGITVNALCPGYVDTQLVRNQLSDLSKTRNVPYDSVLEQV--IFPLVPQKRLLSVKEIADYAVFLASEKAKGVTGQAVVLDGGYT 255          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: YMFI_BACSU (Uncharacterized oxidoreductase ymfI OS=Bacillus subtilis GN=ymfI PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 46/167 (27.54%), Postives = 80/167 (47.90%), Query Frame = -3
Query:  249 LNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 749
            ++ +V N+G +     T+        ++  +  S Y L++   P +  + +G I+ +SS+ G        +Y+  KGA +   K LA E     IRVNAVAP  + T++++      +       +    PI R   P E++   AFL    ASY+TGQ+  ++GG+
Sbjct:   79 IDAIVLNSGRSHFGLITDVDNATVQEMVQLHVASPYMLTRNLLPGMIRNKSGAIVAVSSIWGETGASCEVLYSMAKGAQHSFVKGLAKELAPSGIRVNAVAPGAVDTNMMNQFTPAEK-----EEIADEIPIGRLARPQEIADATAFLLSEKASYITGQILSVNGGW 240          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: LINC_PSEPA (2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase OS=Pseudomonas paucimobilis GN=linC PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 55/178 (30.90%), Postives = 86/178 (48.31%), Query Frame = -3
Query:  246 GKLNILVNNAGTTIPKEA---TEFTMEDFSTIMTTNFESAYH-LSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRT----PIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYS 755
            G L+   NNA   IP+      E ++E F   M  N    +  +      +++    G+I+  +S  GV+ VP+   Y   K A+  LT+  A ++GK  IRVNA+ P  +RT ++       R M++ + L P      PI R  EP+E +    +L   AAS+VTG     DGG++
Sbjct:   79 GGLDGSFNNAA--IPQAGLPLAEVSLERFRQSMDINVTGTFLCMKYQILAMIERGTKGSIVNTASAAGVVGVPMHGEYVGAKHAVVGLTRVAAADYGKHGIRVNALVPGAVRTPMLQ------RAMDNDAGLEPYLNSIHPIGRFSEPHEQAQAAVWLLSDAASFVTGSCLAADGGFT 248          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHB8_PIG (Estradiol 17-beta-dehydrogenase 8 OS=Sus scrofa GN=HSD17B8 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 52/181 (28.73%), Postives = 98/181 (54.14%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            ++L+E V + F    +++V+ AG T  +     + +D+  ++  N +  + ++Q A   L +SG  G+II ISS+ G +     + YA++K  +  LT+ +A E G+  IR N+V P  I+T +   + +  +V++   +++   P+   G P +V+ VVAFL    + Y+TG    + GG
Sbjct:   81 RRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNLKGIFLVTQAAAQALVSSGCPGSIINISSIIGKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQKVPQ--KVLD---KVVGMIPMGHLGGPPDVADVVAFLASEDSGYITGASVEVTGG 256          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: YKVO_BACSU (Uncharacterized oxidoreductase ykvO OS=Bacillus subtilis GN=ykvO PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 58/181 (32.04%), Postives = 82/181 (45.30%), Query Frame = -3
Query:  252 KLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKD--PRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 788
            KL + +  E  GKL+IL  NAG        E T E        N +      Q A  L      G+II   S  G I  P  S+Y ++K A+  L +N   +     IRVN V+P  I T   D +  D    V+E++   +P   +   G P EV++ V+FL    +SY+TG    +DGG
Sbjct:   69 KLYDIIKQE-KGKLDILFANAGIGNFLPLGEITEEQVDRTFDINVKGTIFTVQKALSLFPDKV-GSIIVTGSTAGSIGNPAFSVYGASKAALRALVRNWILDLKGTEIRVNVVSPGGILTPAYDELFGDALEEVLENSRNTVPAGKV---GTPEEVANAVSFLASDESSYLTGVELFVDGG 244          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
MTDH_CLAHE2.924e-1326.09Probable NADP-dependent mannitol dehydrogenase OS=... [more]
FABG_BUCAP2.924e-1328.253-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]
DHB8_CANFA3.819e-1328.18Estradiol 17-beta-dehydrogenase 8 OS=Canis familia... [more]
CBR4_DANRE3.819e-1332.78Carbonyl reductase family member 4 OS=Danio rerio ... [more]
BDH2_BOVIN3.819e-1331.793-hydroxybutyrate dehydrogenase type 2 OS=Bos taur... [more]
YXJF_BACSU4.988e-1330.73Uncharacterized oxidoreductase yxjF OS=Bacillus su... [more]
YMFI_BACSU6.514e-1327.54Uncharacterized oxidoreductase ymfI OS=Bacillus su... [more]
LINC_PSEPA6.514e-1330.902,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydroge... [more]
DHB8_PIG6.514e-1328.73Estradiol 17-beta-dehydrogenase 8 OS=Sus scrofa GN... [more]
YKVO_BACSU1.111e-1232.04Uncharacterized oxidoreductase ykvO OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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