CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: ACT3_STRCO (Putative ketoacyl reductase OS=Streptomyces coelicolor GN=actIII PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 54/179 (30.17%), Postives = 86/179 (48.04%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-----NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK------DPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G +++LVNNAG        E   E +  ++ TN    + +++    +LKA G      G I+ I+S  G   V   + Y+++K  +   TK L  E  +  I VNAV P  + T +  S+ +      +    E   R+  R PI R  +P+EV+ +VA+L  P A+ VT Q   + GG
Sbjct:   82 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTK---QVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 257          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG2_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase 2 OS=Synechocystis sp. (strain PCC 6803) GN=fabG2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12
Identity = 52/166 (31.33%), Postives = 86/166 (51.81%), Query Frame = -3
Query:  249 LVNNAGTTIPKEATEFTMEDFSTIMTTNFES-AYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLP-AASYVTGQVFCIDGGY 740
            +V NAG T      + T  D+  ++  N +  AY +      + +    G+I+ ISS++G       + Y++TK  +  + K+LA E  +  +R NAVAP  I T +  +I +D R      ++    P  R G+P E++  VAFL  P A+SYVTG+V  ++G +
Sbjct:   79 VVANAGITKDNFFPKLTPADWDAVLNVNLKGVAYSIKPFIEGMYERKA-GSIVAISSISGERGNVGQTNYSATKAGVIGMMKSLAREGARYGVRANAVAPGFIDTEMTLAIREDIR-----EKITKEIPFRRFGKPEEIAWAVAFLLSPVASSYVTGEVLRVNGAH 238          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DCXR_TRIRE (L-xylulose reductase OS=Trichoderma reesei GN=lxr1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12
Identity = 51/184 (27.72%), Postives = 90/184 (48.91%), Query Frame = -3
Query:  246 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIA--VPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYS 791
            ++ +  V S+F GK++  + NAG T      + +  D+  ++  +     + ++      K  G+G+++  +S++G +A      + Y   K     L ++LA EW +D  RVN+++P  I T L D I  D +  E    +IP   + R G+  E+     +L   A+SY TG    IDGGY+
Sbjct:   88 ERFVNQVVSDF-GKIDAFIANAGATANSGVVDGSASDWDHVIQVDLSGTAYCAKAVGAHFKKQGHGSLVITASMSGHVANYPQEQTSYNVAKAGCIHLARSLANEW-RDFARVNSISPGYIDTGLSDFI--DEKTQELWRSMIP---MGRNGDAKELKGAYVYLVSDASSYTTGADIVIDGGYT 264          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: YQC8_SCHPO (Uncharacterized oxidoreductase C1739.08c OS=Schizosaccharomyces pombe GN=SPCC1739.08c PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 49/171 (28.65%), Postives = 80/171 (46.78%), Query Frame = -3
Query:  246 KLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVI--AVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYS 752
            +++++V NAG    +   +    +F  +M  N  S Y ++     + K  G GN+I  +S++  I  A    + Y ++K A+ QL K LA EW  +  R+N+V+P    T        D    E   +  P  P  R G   E+     +L   A+S+VTG    +DGGY+
Sbjct:   98 EIHVVVANAGMPFRRSVLDSPPHEFEKVMNINTNSVYRVAYYMGKIFKKQGFGNLIATASMSATIVNAPQHIAAYCASKAAVRQLCKALAVEWA-EFARINSVSPGYFAT--------DMPGYEFLKQWEPYVPFKRLGLTPELRGTYLYLASNASSFVTGLDLIVDGGYT 259          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: SPS19_YEAST (Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Saccharomyces cerevisiae GN=SPS19 PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 49/183 (26.78%), Postives = 88/183 (48.09%), Query Frame = -3
Query:  213 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVM--EHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVNGF*PYGHEM 755
            GK++ ++  A      +    +   F +++  +   +++ ++     LK S  G+I+F+S+      VP      + K  ++ L KNLA E G   IR N +AP       ID+ E   R+   ++  + + + P+ R G   +++    ++  PAASYVTG V  +DGG    G   +GHE+
Sbjct:  104 GKIDFVIAGAAGNFVCDFANLSPNAFKSVVDIDLLGSFNTAKACLKELKKS-KGSILFVSATFHYYGVPFQGHVGAAKAGIDALAKNLAVELGPLGIRSNCIAP-----GAIDNTEGLKRLAGKKYKEKALAKIPLQRLGSTRDIAESTVYIFSPAASYVTGTVLVVDGGMWHLGT-YFGHEL 279          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: MOAE_KLEAE (Protein moaE OS=Klebsiella aerogenes GN=moaE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 43/146 (29.45%), Postives = 71/146 (48.63%), Query Frame = -3
Query:  243 NFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVM-------EHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 659
            N  SA+   +   P L A   GN++F++S+  + A P    Y + K A+  L +++A ++G   +R NA+ P  + T + D  E  P +        E   R+    P+ RP  P E++    FLC P A+ ++G     DGG S+
Sbjct:  105 NLTSAFASVRACLPSLIAR-RGNVLFVASIASLAAGPQACGYVTAKHALIGLMRSVARDYGPQGVRANAICPGWVTTPMADE-EMHPLMQAEGLSLTEAYQRVCRDVPLRRPASPEEIAQACQFLCSPQAAIISGATLVADGGASI 248          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABI_ANASP (Enoyl-[acyl-carrier-protein] reductase [NADH] OS=Anabaena sp. (strain PCC 7120) GN=fabI PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 58/191 (30.37%), Postives = 91/191 (47.64%), Query Frame = -3
Query:  237 ETVCSEFD------GKLNILVNNAGTTIPKEAT----EFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVNG 779
            E + S FD      G+L+IL++        + T    + +   F+T +  +  S   LS  A PL+  +  G+II +S + GV AVP  ++    K  +    + LA E G  NIRVNA++   IRT    ++     ++ H  ++    P+ R     EV +  AFL    AS +TGQV  +D GY + G
Sbjct:   72 EQIQSTFDTIRDKWGRLDILIHCLAFANRDDLTGDFSQTSRAGFATALDISTFSLVQLSGAAKPLM--TEGGSIITLSYLGGVRAVPNYNVMGVAKAGLEASVRYLASELGSQNIRVNAISAGPIRTLASSAVGGILDMIHHVEQV---APLRRTVTQLEVGNTAAFLASDLASGITGQVLYVDAGYEIMG 257          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: YGFF_ECOLI (Uncharacterized oxidoreductase ygfF OS=Escherichia coli (strain K12) GN=ygfF PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.233e-12
Identity = 60/182 (32.97%), Postives = 87/182 (47.80%), Query Frame = -3
Query:  252 METVCSEFDGKLNILVNNAGTTIPKEATE-FTMEDFSTIMTTNFESAYHLSQLAYP--LLKASGNGN-IIFISSVTGVIAVPLCSI-YASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 782
            M T   + D  L  LVNNAG    +   E  T E  + +++TN    +   + A     LK  G+G  I+ +SSV   +  P   + YA++KGA++ LT  L+ E     IRVN V P  I T +  S  +  RV     R+    P+ R G+  EV+  + +L    ASYVTG    + GG
Sbjct:   69 MFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRV----DRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSFIDLAGG 246          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: SDR1_PICAB (Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.233e-12
Identity = 52/170 (30.59%), Postives = 82/170 (48.24%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEAT--EFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G L+I+VNNAG T  K  T  + + E++  I   N + A+  S+ A   +   G G II ISS    + +P    Y ++K A+  +T+ LA E     I  N VAP  + T +  + + +  V       +   P  R G+  +V+ +VAFL      +V  QV  ++GG
Sbjct:  104 GPLHIVVNNAGVTDSKYPTLAQTSDEEWDRIFQVNCKGAFLCSREAAKRVVRGGGGRIINISSSLVAMPIPRYGAYTASKAAVEMMTRILAQELRGTQITANCVAPGPVATDMFFAGKSEAAV----EAGVKSNPFERLGKVEDVAPLVAFLASDEGEWVNAQVVRVNGG 269          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: GRDH1_ARATH (Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.233e-12
Identity = 58/186 (31.18%), Postives = 91/186 (48.92%), Query Frame = -3
Query:  240 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMED-FSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFL-CLPAASYVTGQVFCIDGGYSVN 791
            +++++ V + F G++++L+NNA         E   E     +  TN  S + L++ A   +K   +  II  +SV           Y +TKGA+   T+ LA +  +  IRVN VAP  I T LI +   + ++    S +    P+ R G+P EV+    FL C   +SY TGQV   +GG  VN
Sbjct:  109 KRVVDEVVNAF-GRIDVLINNAAEQYESSTIEEIDEPRLERVFRTNIFSYFFLTRHALKHMKEGSS--IINTTSVNAYKGNASLLDYTATKGAIVAFTRGLALQLAEKGIRVNGVAPGPIWTPLIPASFNEEKIKNFGSEV----PMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAVVN 287          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ACT3_STRCO1.111e-1230.17Putative ketoacyl reductase OS=Streptomyces coelic... [more]
FABG2_SYNY31.895e-1231.333-oxoacyl-[acyl-carrier-protein] reductase 2 OS=Sy... [more]
DCXR_TRIRE1.895e-1227.72L-xylulose reductase OS=Trichoderma reesei GN=lxr1... [more]
YQC8_SCHPO2.475e-1228.65Uncharacterized oxidoreductase C1739.08c OS=Schizo... [more]
SPS19_YEAST2.475e-1226.78Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Sac... [more]
MOAE_KLEAE2.475e-1229.45Protein moaE OS=Klebsiella aerogenes GN=moaE PE=3 ... [more]
FABI_ANASP2.475e-1230.37Enoyl-[acyl-carrier-protein] reductase [NADH] OS=A... [more]
YGFF_ECOLI3.233e-1232.97Uncharacterized oxidoreductase ygfF OS=Escherichia... [more]
SDR1_PICAB3.233e-1230.59Short-chain type dehydrogenase/reductase OS=Picea ... [more]
GRDH1_ARATH3.233e-1231.18Glucose and ribitol dehydrogenase homolog 1 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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