CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: UCPA_ECO57 (Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN=ucpA PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.226e-19
Identity = 61/175 (34.86%), Postives = 99/175 (56.57%), Query Frame = -3
Query:  252 EFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTG-VIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI--EKDPRVMEHA-SRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 764
            E +G+++ILVNNAG        + + +D    +  N +  +++++   P + A  +G I+ +SSVTG ++A P  + YA TK A+  LTK+LA E+ +  IRVNA+ P  +RT + +SI  + +P   E   + +    P+ R  +P EV  + AFL    +SY+TG    IDGG
Sbjct:   78 EKEGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: HSD_MYCTU (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium tuberculosis GN=fabG3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.226e-19
Identity = 58/177 (32.77%), Postives = 94/177 (53.11%), Query Frame = -3
Query:  252 METVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 782
            ++T  + F G L++LVNNAG        ++ + ++  I+  N    +   +     +K +G G+II ISS+ G+     C  Y +TK A+  LTK+ A E G   IRVN++ P +++T + D + +D          I +T + R  EP EVS++V +L    +SY TG  F +DGG
Sbjct:   72 VDTAVTAFGG-LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPED----------IFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGG 237          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: HSD_MYCBO (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium bovis GN=fabG3 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.226e-19
Identity = 58/177 (32.77%), Postives = 94/177 (53.11%), Query Frame = -3
Query:  252 METVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 782
            ++T  + F G L++LVNNAG        ++ + ++  I+  N    +   +     +K +G G+II ISS+ G+     C  Y +TK A+  LTK+ A E G   IRVN++ P +++T + D + +D          I +T + R  EP EVS++V +L    +SY TG  F +DGG
Sbjct:   72 VDTAVTAFGG-LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPED----------IFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGG 237          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_VIBCH (3-oxoacyl-[acyl-carrier-protein] reductase OS=Vibrio cholerae GN=fabG PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.226e-19
Identity = 58/180 (32.22%), Postives = 93/180 (51.67%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            + +++ +  EF G ++ILVNNAG T          E++S IM TN  S + LS+     +     G II + SV G +     + YA+ K  +   TK++A E     + VN VAP  I T +  ++  + R     +  + + P  R G+P E++S VAFL  P A+Y+TG+   ++GG
Sbjct:   67 EAVLKAITDEFGG-VDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQR-----TATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGG 240          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHG_BACME (Glucose 1-dehydrogenase OS=Bacillus megaterium PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.226e-19
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            L+++   EF GKL++++NNAG   P  + E ++ D++ ++ TN   A+  S+ A      +   G +I +SSV   I  PL   YA++KG M  +T+ LA E+    IRVN + P  I T +      DP        +IP   I   GEP E+++V A+L    ASYVTG     DGG
Sbjct:   75 LVQSAIKEF-GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYI---GEPEEIAAVAAWLASSEASYVTGITLFADGG 249          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHG4_BACME (Glucose 1-dehydrogenase 4 OS=Bacillus megaterium GN=gdhIV PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.226e-19
Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            L++T   EF G L++++NNAG   P  + E ++++++ ++ TN   A+  S+ A      +   GN+I +SSV  +I  PL   YA++KG M  +T+ LA E+    IRVN + P  + T +      DP        +IP   I   G+P EV++V AFL    ASYVTG     DGG
Sbjct:   75 LVQTAIKEF-GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVESMIPMGYI---GKPEEVAAVAAFLASSQASYVTGITLFADGG 249          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: Y4LA_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4lA OS=Rhizobium sp. (strain NGR234) GN=NGR_a02730 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.601e-19
Identity = 66/182 (36.26%), Postives = 95/182 (52.20%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAG----TTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            L ET    F G +++LVNNA     T   +   +  +  +   M TN        + A P + A G G I+ +SS  G+      + YA +K AMN L+ +LA ++G   IR NAVAP +I T  +   + D  +  H SR      +PR G P +V+++VAFL    AS++TGQV CIDGG
Sbjct:   73 LFETAERHFGG-VDLLVNNASAMHLTPRDRAILDLDLAVWDQTMATNLRGTLLCCRQAIPRMIARGGGAIVNMSSCQGLSGDTAQTSYAVSKAAMNMLSASLATQYGHAQIRCNAVAPGLIMTERL-LAKLDKCMQRHLSR---HQLLPRVGHPEDVAALVAFLLSDDASFITGQVVCIDGG 249          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: Y2146_BRAJA (Probable short-chain type dehydrogenase/reductase blr2146 OS=Bradyrhizobium japonicum GN=blr2146 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.601e-19
Identity = 65/182 (35.71%), Postives = 95/182 (52.20%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAG----TTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            L ET    F G +++LVNNA     T   +   E  +  +   M TN        + A P + A G G I+ +SS  G+      + YA++K AMN L+ +LA ++G   IR NAVAP +I T  +   + D  +  H  R      +PR G P +V+++VAFL    A+++TGQV CIDGG
Sbjct:   73 LFETAERHFGG-VDLLVNNASAMHLTPRDRAILELELAVWDQTMATNLRGTLLCCRQAIPRMIARGGGAIVNMSSCQGLSGDTALTSYAASKAAMNMLSSSLATQYGHAQIRCNAVAPGLIMTERL-LAKLDACMQTHLRR---HQLLPRVGRPEDVAALVAFLLSDDAAFITGQVVCIDGG 249          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: UCPA_ECOLI (Oxidoreductase ucpA OS=Escherichia coli (strain K12) GN=ucpA PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.601e-19
Identity = 61/175 (34.86%), Postives = 99/175 (56.57%), Query Frame = -3
Query:  252 EFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTG-VIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI--EKDPRVMEHA-SRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 764
            E +G+++ILVNNAG        + + +D    +  N +  +++++   P + A  +G I+ +SSVTG ++A P  + YA TK A+  LTK+LA E+ +  IRVNA+ P  +RT + +SI  + +P   E   + +    P+ R  +P EV  + AFL    +SY+TG    IDGG
Sbjct:   78 EKEGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG1_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Synechocystis sp. (strain PCC 6803) GN=fabG1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.091e-19
Identity = 56/180 (31.11%), Postives = 96/180 (53.33%), Query Frame = -3
Query:  252 KLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCL-PAASYVTGQVFCIDGG 788
            +L++T   +F  ++++LVNNAG T         +ED+  ++  N    +  ++    L+    +G II I+SV G++  P  + Y++ K  +   TK +A E     + VNAVAP  I T + +++  +P        ++   P+ R G+P EV+  + FL   PAA+Y+TGQ F +DGG
Sbjct:   73 QLIKTTLDKFS-RIDVLVNNAGITRDTLLLRMKLEDWQAVIDLNLTGVFLCTKAVSKLMLKQKSGRIINITSVAGMMGNPGQANYSAAKAGVIGFTKTVAKELASRGVTVNAVAPGFIATDMTENLNAEP--------ILQFIPLARYGQPEEVAGTIRFLATDPAAAYITGQTFNVDGG 243          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
UCPA_ECO571.226e-1934.86Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN... [more]
HSD_MYCTU1.226e-1932.773-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
HSD_MYCBO1.226e-1932.773-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
FABG_VIBCH1.226e-1932.223-oxoacyl-[acyl-carrier-protein] reductase OS=Vibr... [more]
DHG_BACME1.226e-1935.20Glucose 1-dehydrogenase OS=Bacillus megaterium PE=... [more]
DHG4_BACME1.226e-1935.20Glucose 1-dehydrogenase 4 OS=Bacillus megaterium G... [more]
Y4LA_RHISN1.601e-1936.26Uncharacterized short-chain type dehydrogenase/red... [more]
Y2146_BRAJA1.601e-1935.71Probable short-chain type dehydrogenase/reductase ... [more]
UCPA_ECOLI1.601e-1934.86Oxidoreductase ucpA OS=Escherichia coli (strain K1... [more]
FABG1_SYNY32.091e-1931.113-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Sy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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