CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1138 contig Csv1_Contig1138:1..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHG1_BACME (Glucose 1-dehydrogenase 1 OS=Bacillus megaterium GN=gdhI PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.091e-19
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            L+++   EF GKL++++NNAG   P  + E ++ D++ ++ TN   A+  S+ A      +   G +I +SSV   I  PL   YA++KG M  +T+ LA E+    IRVN + P  I T +      DP        +IP   I   GEP E+++V A+L    ASYVTG     DGG
Sbjct:   75 LVQSSIKEF-GKLDVMINNAGMENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYI---GEPEEIAAVAAWLASSEASYVTGITLFADGG 249          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: KDUD_BACSU (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Bacillus subtilis GN=kduD PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.730e-19
Identity = 56/168 (33.33%), Postives = 90/168 (53.57%), Query Frame = -3
Query:  249 KLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 752
            +++ILVNNAG    ++A +F  E++  ++  N  S + L+QLA   +   G+G II I+S+       L   Y ++K A+  LTK+ A EW    I+VNA+AP  I T+    I  D +  E    ++ R P  R G+ +++     FL   A+ YV G +  +DGG+
Sbjct:   87 QIDILVNNAGIIHREKAEDFPEENWQHVLNVNLNSLFILTQLAGRHMLKRGHGKIINIASLLSFQGGILVPAYTASKHAVAGLTKSFANEWAASGIQVNAIAPGYISTANTKPIRDDEKRNED---ILKRIPAGRWGQADDIGGTAVFLASRASDYVNGHILAVDGGW 251          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_STAAW (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.730e-19
Identity = 57/178 (32.02%), Postives = 96/178 (53.93%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            +++ V S+F G L++LVNNAG T          +++  ++ TN +  ++  Q A P +    +G II +SSV G +  P  + Y +TK  +  LTK+ A E     I VNAVAP  I + + D++       E   +++ + P+ R G+  ++++ VAFL    A Y+TGQ   ++GG
Sbjct:   72 MIKEVVSQF-GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSD-----ELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_STAAS (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MSSA476) GN=fabG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.730e-19
Identity = 57/178 (32.02%), Postives = 96/178 (53.93%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            +++ V S+F G L++LVNNAG T          +++  ++ TN +  ++  Q A P +    +G II +SSV G +  P  + Y +TK  +  LTK+ A E     I VNAVAP  I + + D++       E   +++ + P+ R G+  ++++ VAFL    A Y+TGQ   ++GG
Sbjct:   72 MIKEVVSQF-GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSD-----ELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_STAAR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MRSA252) GN=fabG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.730e-19
Identity = 57/178 (32.02%), Postives = 96/178 (53.93%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            +++ V S+F G L++LVNNAG T          +++  ++ TN +  ++  Q A P +    +G II +SSV G +  P  + Y +TK  +  LTK+ A E     I VNAVAP  I + + D++       E   +++ + P+ R G+  ++++ VAFL    A Y+TGQ   ++GG
Sbjct:   72 MIKEVVSQF-GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSD-----ELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_STAAN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain N315) GN=fabG PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.730e-19
Identity = 57/178 (32.02%), Postives = 96/178 (53.93%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            +++ V S+F G L++LVNNAG T          +++  ++ TN +  ++  Q A P +    +G II +SSV G +  P  + Y +TK  +  LTK+ A E     I VNAVAP  I + + D++       E   +++ + P+ R G+  ++++ VAFL    A Y+TGQ   ++GG
Sbjct:   72 MIKEVVSQF-GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSD-----ELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_STAAM (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fabG PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.730e-19
Identity = 57/178 (32.02%), Postives = 96/178 (53.93%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            +++ V S+F G L++LVNNAG T          +++  ++ TN +  ++  Q A P +    +G II +SSV G +  P  + Y +TK  +  LTK+ A E     I VNAVAP  I + + D++       E   +++ + P+ R G+  ++++ VAFL    A Y+TGQ   ++GG
Sbjct:   72 MIKEVVSQF-GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSD-----ELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_STAAC (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain COL) GN=fabG PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.730e-19
Identity = 57/178 (32.02%), Postives = 96/178 (53.93%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            +++ V S+F G L++LVNNAG T          +++  ++ TN +  ++  Q A P +    +G II +SSV G +  P  + Y +TK  +  LTK+ A E     I VNAVAP  I + + D++       E   +++ + P+ R G+  ++++ VAFL    A Y+TGQ   ++GG
Sbjct:   72 MIKEVVSQF-GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSD-----ELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.730e-19
Identity = 59/181 (32.60%), Postives = 95/181 (52.49%), Query Frame = -3
Query:  240 METVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVN 782
            ++T+ +E D +L+ LVNNAG    K   + + E++  I   N  S +  ++     ++ +  G I+ +SS+ G++  P  + Y ++KGA+   TK  A +    NIRVN+V P +I T +   I   P   + A  L+  T + R  +P EVS  V FL    AS+V G    +DGGY+ N
Sbjct:   74 VDTILAESD-RLDALVNNAGILTLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQILDAP---QSARALLGPTLLGRAAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYTAN 250          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: CPNA_COMS9 (Cyclopentanol dehydrogenase OS=Comamonas sp. (strain NCIMB 9872) GN=cpnA PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.730e-19
Identity = 59/181 (32.60%), Postives = 95/181 (52.49%), Query Frame = -3
Query:  240 METVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVN 782
            ++T+ +E D +L+ LVNNAG    K   + + E++  I   N  S +  ++     ++ +  G I+ +SS+ G++  P  + Y ++KGA+   TK  A +    NIRVN+V P +I T +   I   P   + A  L+  T + R  +P EVS  V FL    AS+V G    +DGGY+ N
Sbjct:   74 VDTILAESD-RLDALVNNAGILTLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQILDAP---QSARALLGPTLLGRAAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYTAN 250          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
DHG1_BACME2.091e-1935.20Glucose 1-dehydrogenase 1 OS=Bacillus megaterium G... [more]
KDUD_BACSU2.730e-1933.332-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=B... [more]
FABG_STAAW2.730e-1932.023-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAS2.730e-1932.023-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAR2.730e-1932.023-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAN2.730e-1932.023-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAM2.730e-1932.023-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAC2.730e-1932.023-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
CPNA_COMTE2.730e-1932.60Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]
CPNA_COMS92.730e-1932.60Cyclopentanol dehydrogenase OS=Comamonas sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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