CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_CUPLA (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.566e-19
Identity = 58/172 (33.72%), Postives = 90/172 (52.33%), Query Frame = -3
Query:  243 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCL-PAASYVTGQVFCIDGGYSV 755
            G ++ILVNNAG T            +  ++  N    +  +Q A  ++     G II I+SV G++     + Y++ K  +   TK +A E+   NI VNAVAP  I + +   +  D        +++   P+ R G+P EV+ +V FL + PA+SYVTGQVF IDGG ++
Sbjct:  154 GTVDILVNNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNAGQANYSAAKAGVIGFTKTVAREYASRNINVNAVAPGFISSDMTSKLGDDIN-----KKILETIPLGRYGQPEEVAGLVEFLAINPASSYVTGQVFTIDGGMTM 320          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: UCPA_SALTY (Oxidoreductase ucpA OS=Salmonella typhimurium GN=ucpA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 60/177 (33.90%), Postives = 98/177 (55.37%), Query Frame = -3
Query:  252 EFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTG-VIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK-----DPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 764
            E +G+++ILVNNAG        + + ED    +  N +  +++++   P +    +G I+ +SSVTG ++A P  + YA +K A+  LTK+LA E+ +  IRVNA+ P  +RT + +SI +     DP  +   + +    P+ R  +P EV  + AFL    +SY+TG    IDGG
Sbjct:   78 ETEGRIDILVNNAGVCRLGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPDDPESV--LTEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: UCPA_SALTI (Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 60/177 (33.90%), Postives = 98/177 (55.37%), Query Frame = -3
Query:  252 EFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTG-VIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK-----DPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 764
            E +G+++ILVNNAG        + + ED    +  N +  +++++   P +    +G I+ +SSVTG ++A P  + YA +K A+  LTK+LA E+ +  IRVNA+ P  +RT + +SI +     DP  +   + +    P+ R  +P EV  + AFL    +SY+TG    IDGG
Sbjct:   78 ETEGRIDILVNNAGVCRLGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPDDPESV--LTEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_CHLTR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia trachomatis GN=fabG PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 6.083e-19
Identity = 57/167 (34.13%), Postives = 93/167 (55.69%), Query Frame = -3
Query:  252 LNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHL-SQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 749
            ++++VNNAG T        + E++S+++ TN  S Y++ S +  P++KA  +G II ISS+ G+   P  + YA+ K  +   +K L+ E G  NIRVN +AP  I T +  S+  + +     +  +   P+ R G P E++    FL    +SY+TGQV  +DGG
Sbjct:   86 IDVIVNNAGITRDALLMRMSEEEWSSVINTNLGSIYNVCSAVIRPMIKAR-SGAIINISSIVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMTKSLNDNLK-----NEWLKGVPLGRVGMPEEIAKAALFLASDGSSYITGQVLSVDGG 246          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FIXR_BRAJA (Protein fixR OS=Bradyrhizobium japonicum GN=fixR PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.944e-19
Identity = 65/175 (37.14%), Postives = 97/175 (55.43%), Query Frame = -3
Query:  252 LNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG--------NGNIIFISSVTGVIAVPLC-SIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 749
            L+ LVNNAG + PK  T   M   +T  T  +   +HL+ +A P+L A G        +G+I+ ++S+ G    P   S YA++K A+  LT+ LA ++    IRVNA+AP  IRT ++          +  +R++   P+ R G P+EV+ V+ FLC  AASYVTG    I+GG
Sbjct:  112 LHALVNNAGVS-PKTPTGDRMTSLTT-STDTWMRVFHLNLVA-PILLAQGLFDELRAASGSIVNVTSIAGSRVHPFAGSAYATSKAALASLTRELAHDYAPHGIRVNAIAPGEIRTDMLSP--------DAEARVVASIPLRRVGTPDEVAKVIFFLCSDAASYVTGAEVPINGG 275          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: GS39_BACSU (General stress protein 39 OS=Bacillus subtilis GN=ydaD PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.038e-18
Identity = 64/169 (37.87%), Postives = 87/169 (51.48%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEAT-EFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G L+ILVNNAG   PKE+  + T E       TNF S ++L++ A   LK      II  +S+   +  P    Y +TKGA+N  T+ +A    KD IRVNAVAP  I T LI +   +  V +        TP+ RPG+P E       L    +SY+TGQ   ++GG
Sbjct:  119 GGLDILVNNAGEQHPKESIKDITSEQLHRTFKTNFYSQFYLTKKAIDYLKPGSA--IINTTSINPYVGNPTLIDYTATKGAINAFTRTMAQALVKDGIRVNAVAPGPIWTPLIPATFPEETVAQFGQ----DTPMGRPGQPVEHVGCYVLLASDESSYMTGQTLHVNGG 281          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: NODG_AZOBR (Nodulation protein G OS=Azospirillum brasilense GN=nodG PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.355e-18
Identity = 57/168 (33.93%), Postives = 85/168 (50.60%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G ++ILVNNAG T  K   +     +  ++ TN  S ++++Q   P +   G G II ISSV GV      + Y++ K  +   TK LA E     + VNA+AP  I T ++ +I +D R       +    P+ R G P+E+   V++L    A YVTG    I+GG
Sbjct:   80 GPVDILVNNAGITRDKFFAKMDKAQWDAVIATNLSSLFNVTQQVSPKMAERGWGRIINISSVNGVKGQAGQTNYSAAKAGVIGFTKALAAELATKGVTVNAIAPGYIGTDMVMAIREDIR-----QAITDSVPMKRLGRPDEIGGAVSYLASEIAGYVTGSTLNINGG 242          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_MYCTU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium tuberculosis GN=fabG PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.355e-18
Identity = 57/175 (32.57%), Postives = 92/175 (52.57%), Query Frame = -3
Query:  252 TVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 776
            T   E  G + +LV+NAG +        T E F  ++  N   A+ ++Q A   ++ +  G +IFI SV+G   +   + YA++K  +  + +++A E  K N+  N VAP  I T +  ++  D R+ + A + I   P  R G P EV+ VV+FL    ASY++G V  +DGG
Sbjct:   73 TAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL--DERIQQGALQFI---PAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGG 242          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_MYCBO (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium bovis GN=fabG PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.355e-18
Identity = 57/175 (32.57%), Postives = 92/175 (52.57%), Query Frame = -3
Query:  252 TVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 776
            T   E  G + +LV+NAG +        T E F  ++  N   A+ ++Q A   ++ +  G +IFI SV+G   +   + YA++K  +  + +++A E  K N+  N VAP  I T +  ++  D R+ + A + I   P  R G P EV+ VV+FL    ASY++G V  +DGG
Sbjct:   73 TAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL--DERIQQGALQFI---PAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGG 242          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_CHLMU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia muridarum GN=fabG PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.355e-18
Identity = 56/169 (33.14%), Postives = 93/169 (55.03%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHL-SQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G ++++VNNAG T        + E++S+++ TN  S Y++ S +  P++KA  +G I+ ISS+ G+   P  + YA+ K  +   +K L+ E G  NIRVN +AP  I T +   +  + +     +  +   P+ R G P E++    FL    +SY+TGQV  +DGG
Sbjct:   84 GTIDVVVNNAGITRDSLLMRMSEEEWSSVIDTNLGSIYNVCSAVIRPMIKAR-SGAIVNISSIVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMTKGLSDNLK-----NEWLKGVPLGRVGTPEEIAMAALFLASNQSSYITGQVLSVDGG 246          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
FABG_CUPLA3.566e-1933.723-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
UCPA_SALTY4.657e-1933.90Oxidoreductase ucpA OS=Salmonella typhimurium GN=u... [more]
UCPA_SALTI4.657e-1933.90Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE... [more]
FABG_CHLTR6.083e-1934.133-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
FIXR_BRAJA7.944e-1937.14Protein fixR OS=Bradyrhizobium japonicum GN=fixR P... [more]
GS39_BACSU1.038e-1837.87General stress protein 39 OS=Bacillus subtilis GN=... [more]
NODG_AZOBR1.355e-1833.93Nodulation protein G OS=Azospirillum brasilense GN... [more]
FABG_MYCTU1.355e-1832.573-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
FABG_MYCBO1.355e-1832.573-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]
FABG_CHLMU1.355e-1833.143-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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