CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: Y4MP_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4mP OS=Rhizobium sp. (strain NGR234) GN=NGR_a02430 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.770e-18
Identity = 60/185 (32.43%), Postives = 99/185 (53.51%), Query Frame = -3
Query:  240 ETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVT-----GVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVN 779
            + V S F G  NIL+NNAG T P +  + +  D+  I+  N     +LSQ+  P ++ +G G+I  +SSV+     G+   P    Y++ K  +  L K +A E+G D+IRVN V P +I+T     I  D    E  + ++   P+ R G+  +V+++  FL    ++YVTG V  ++GG  ++
Sbjct:   77 DEVLSAF-GVANILINNAGITQPVKTLDISDADWQRIVAVNMTGVLNLSQVFIPNMRQNGGGSIACMSSVSAQRGGGIFGGP---HYSAAKAGVLGLAKAMAREFGPDSIRVNCVTPGLIQT----DITGDKLSAEMRADIVKGIPLSRLGDARDVANIYLFLASDLSAYVTGAVIDVNGGMLIH 253          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_RICFE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia felis GN=fabG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.770e-18
Identity = 56/167 (33.53%), Postives = 90/167 (53.89%), Query Frame = -3
Query:  252 KLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 752
            KL+ILV NAG T    A     EDF  ++  N ++ + L++ A   +  +  G II ISS+ G+   P  + Y ++K  +  +TK+L+ E     I VNAVAP  I++ + D + +  R       ++ + P+   G P +V++ VAFL    ASY+TGQ   ++GG
Sbjct:   76 KLDILVCNAGITSDTLAIRMKDEDFDKVIDINLKANFILNREAIKKMMQNRYGRIINISSIVGISGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQR-----EAIVQKIPLGTYGMPEDVANAVAFLASDQASYITGQTIHVNGG 237          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: CBR2_PIG (Carbonyl reductase [NADPH] 2 OS=Sus scrofa GN=CBR2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.770e-18
Identity = 55/170 (32.35%), Postives = 92/170 (54.12%), Query Frame = -3
Query:  249 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQL-AYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 755
            G +++LVNNA   + +   + T E F      N  S + +SQ+ A  +++    G+I+ +SS+   +  P  + Y+STKGAM  LTK++A E G   IRVN+V P ++ T++  S+  DP   E A +L  R P+ +  E  +V + + FL    ++  +G    +D GY
Sbjct:   75 GPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPTVVLTAMGRSVTSDP---ELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAGY 241          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: YGCW_ECOLI (Uncharacterized oxidoreductase ygcW OS=Escherichia coli (strain K12) GN=ygcW PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.311e-18
Identity = 57/183 (31.15%), Postives = 91/183 (49.73%), Query Frame = -3
Query:  243 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 791
            QK++   C  F G ++ILVNNAG     +  +F   D+  ++  N  +A+ LS  A  ++    +G II I S+   +       Y++TK A+   TK    E G+ NI+VN +AP    T +  +   +P   E   R++   P  R G+  ++     FL  PA++YV G +  +DGGY V
Sbjct:   82 QKIIAACCERF-GTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNP---ETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLV 260          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.311e-18
Identity = 56/178 (31.46%), Postives = 100/178 (56.18%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            L+ T    F G L+++VNNAG T        T E F  ++  + +  ++ ++LA  +++    G I+ +SSV+G + +   + Y++ K  +  +TK  A E     IRVNA+AP +IR+++ +++ +  R+ +   + +   P+ R GEP+EV+SV  FL    +SY+TG V  + GG
Sbjct:   73 LIRTAVERFGG-LDVMVNNAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQ--RIWD---QKLAEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGG 244          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.311e-18
Identity = 56/178 (31.46%), Postives = 100/178 (56.18%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            L+ T    F G L+++VNNAG T        T E F  ++  + +  ++ ++LA  +++    G I+ +SSV+G + +   + Y++ K  +  +TK  A E     IRVNA+AP +IR+++ +++ +  R+ +   + +   P+ R GEP+EV+SV  FL    +SY+TG V  + GG
Sbjct:   73 LIRTAVERFGG-LDVMVNNAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQ--RIWD---QKLAEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGG 244          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: GRDH_ORYSJ (Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica GN=Os05g0140800 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.311e-18
Identity = 61/192 (31.77%), Postives = 102/192 (53.12%), Query Frame = -3
Query:  237 QKLMETVCSEFDGKLNILVNNAGTTIPKEA-TEFTMEDFSTIMTTNFESAYHLSQLAYPLLK------ASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVNG 791
            +K+++ V   + G ++ILVNNA     + + T+ T +D   +  TN  S + +S+ A   ++       +G  +II  SS+           Y +TKGA+   T+ LA +  ++ IRVN VAP  I T LI +   + +V +  S++    P+ R G+P+EV+    FL    ASY++GQ+  ++GG  VNG
Sbjct:  113 RKVVDEVAGAYGGAIDILVNNAAEQYERPSITDITEDDLERVFRTNIFSYFFMSKHAVKRMRDRRGGAGAGGCSIINTSSINAYKGNKTLLDYTATKGAIVAFTRALALQLAEEGIRVNGVAPGPIWTPLIPASFAEEKVRQFGSQV----PMGRAGQPSEVAPSFVFLASDDASYMSGQMLHVNGGVIVNG 300          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.019e-18
Identity = 60/182 (32.97%), Postives = 94/182 (51.65%), Query Frame = -3
Query:  243 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCL-PAASYVTGQVFCIDGGYSV 785
            +M+T   ++ G ++++VNNAG T            +  ++  N    +  +Q A  ++     G II ISSV G+I     + YA+ KG +   +K  A E    NI VN V P  I + +   + +D   ME   +++   P+ R G+  EV+ +V FL L PAASY+TGQ F IDGG ++
Sbjct:  144 MMKTALDKW-GTIDVVVNNAGITRDTLLIRMKQSQWDEVIALNLTGVFLCTQAAVKIMMKKKRGRIINISSVVGLIGNIGQANYAAAKGGVISFSKTAAREGASRNINVNVVCPGFIASDMTAELGED---ME--KKILGTIPLGRYGKAEEVAGLVEFLALSPAASYITGQAFTIDGGIAI 319          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.019e-18
Identity = 58/182 (31.87%), Postives = 94/182 (51.65%), Query Frame = -3
Query:  252 RQKLMETVCSEFDGKLNILVNNAGTT-IPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 794
            R++L+ T   +  G ++IL++NA  +       +   E +  I+  N ++   L++   P +   G G+I+ +SS+      P    Y  +K A+  LTKNLA E  + N+RVN +AP +IRTS    + +DP   E          I R G+P E + +V+FLC   ASY+TG+   + GG
Sbjct:   78 RERLVATAV-KLHGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLALELAESNVRVNCLAPGLIRTSFSRVLWEDPARQESIKATF---QIKRIGKPEECAGIVSFLCSEDASYITGETVVVAGG 255          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: CBR2_MOUSE (Carbonyl reductase [NADPH] 2 OS=Mus musculus GN=Cbr2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.019e-18
Identity = 56/170 (32.94%), Postives = 88/170 (51.76%), Query Frame = -3
Query:  249 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQL-AYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 755
            G +++LVNNA   I +   E T E F    + N  S + +SQ+ A  ++     G+I+ +SS+   +  P    Y+STKGAM  LTK +A E G   IRVN+V P ++ T +   +  DP   E A +L  R P+ +  E  +V + + FL    ++  +G    +D GY
Sbjct:   75 GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADP---EFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGY 241          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
Y4MP_RHISN1.770e-1832.43Uncharacterized short-chain type dehydrogenase/red... [more]
FABG_RICFE1.770e-1833.533-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
CBR2_PIG1.770e-1832.35Carbonyl reductase [NADPH] 2 OS=Sus scrofa GN=CBR2... [more]
YGCW_ECOLI2.311e-1831.15Uncharacterized oxidoreductase ygcW OS=Escherichia... [more]
Y1385_MYCBO2.311e-1831.46Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]
Y1350_MYCTU2.311e-1831.46Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]
GRDH_ORYSJ2.311e-1831.77Glucose and ribitol dehydrogenase homolog OS=Oryza... [more]
FABG_ARATH3.019e-1832.973-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
DHRS4_BOVIN3.019e-1831.87Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
CBR2_MOUSE3.019e-1832.94Carbonyl reductase [NADPH] 2 OS=Mus musculus GN=Cb... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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