CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1138 contig Csv1_Contig1138:1..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_STAES (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fabG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.943e-18
Identity = 53/180 (29.44%), Postives = 97/180 (53.89%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            +++++ V S+F G +++LVNNAG T          +++  ++ TN +  ++  Q   P +    +G II ++S+ G +  P  + Y +TK  +  LTK  A E     I VNAVAP  I + + +++  D +      +++ + P+ R GE  ++++ VAFL    A Y+TGQ   ++GG
Sbjct:   68 KEMIKEVVSQF-GSVDVLVNNAGITKDNLLMRMKEQEWDDVIDTNLKGVFNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTNALSDDLK-----DQMLEQIPLKRFGEDTDIANTVAFLASDKAKYITGQTIHVNGG 241          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_STAEQ (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fabG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.943e-18
Identity = 53/180 (29.44%), Postives = 97/180 (53.89%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            +++++ V S+F G +++LVNNAG T          +++  ++ TN +  ++  Q   P +    +G II ++S+ G +  P  + Y +TK  +  LTK  A E     I VNAVAP  I + + +++  D +      +++ + P+ R GE  ++++ VAFL    A Y+TGQ   ++GG
Sbjct:   68 KEMIKEVVSQF-GSVDVLVNNAGITKDNLLMRMKEQEWDDVIDTNLKGVFNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTNALSDDLK-----DQMLEQIPLKRFGEDTDIANTVAFLASDKAKYITGQTIHVNGG 241          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_SALTY (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhimurium GN=fabG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.943e-18
Identity = 58/180 (32.22%), Postives = 93/180 (51.67%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            + ++E + +EF G+++ILVNNAG T          ++++ I+ TN  S + LS+     +     G II I SV G +     + YA+ K  +   +K+LA E     I VN VAP  I T +  ++  D R     + ++ + P  R G   E++S VAFL    ASY+TG+   ++GG
Sbjct:   67 ESVLENIRAEF-GEVDILVNNAGITRDNLLMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQR-----AGILAQVPAGRLGGAQEIASAVAFLASDEASYITGETLHVNGG 240          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_SALTI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhi GN=fabG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.943e-18
Identity = 58/180 (32.22%), Postives = 93/180 (51.67%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            + ++E + +EF G+++ILVNNAG T          ++++ I+ TN  S + LS+     +     G II I SV G +     + YA+ K  +   +K+LA E     I VN VAP  I T +  ++  D R     + ++ + P  R G   E++S VAFL    ASY+TG+   ++GG
Sbjct:   67 ESVLENIRAEF-GEVDILVNNAGITRDNLLMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQR-----AGILAQVPAGRLGGAQEIASAVAFLASDEASYITGETLHVNGG 240          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: YOHF_ECOLI (Uncharacterized oxidoreductase yohF OS=Escherichia coli (strain K12) GN=yohF PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.149e-18
Identity = 57/170 (33.53%), Postives = 89/170 (52.35%), Query Frame = -3
Query:  249 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAY-PLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 755
            G++++LVNNAG        +   +++  I T + + A+  SQ+A   ++K    G II I+SV     +P  S Y + K A+  LTK +A E  +  I VNAVAP  I T +    + D +         P  P+ R G  +E++S+V +LC   A+Y TGQ   +DGG+
Sbjct:   79 GRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAE-----PSIPLRRFGATHEIASLVVWLCSEGANYTTGQSLIVDGGF 243          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: LVR_LEIAQ (Levodione reductase OS=Leifsonia aquatica GN=lvr PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.149e-18
Identity = 61/181 (33.70%), Postives = 96/181 (53.04%), Query Frame = -3
Query:  246 TVCSEFDGKLNILVNNAGTTIPKEATE-FTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK--DP-RVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYS 776
            T  +E  G+++   NNAG    +  TE FT  +F  +++ N    +   +    +++  G+G ++  +SV G+  +   S YA+ K  +  LT+N A E+G+  IR+NA+AP  I T ++++  K  DP    + A   I   P  R GE  E+++VVAFL    ASYV   V  IDGG S
Sbjct:   84 TATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQS 264          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_SHIFL (3-oxoacyl-[acyl-carrier-protein] reductase OS=Shigella flexneri GN=fabG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.149e-18
Identity = 57/180 (31.67%), Postives = 94/180 (52.22%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            + ++E + +EF G+++ILVNNAG T          E+++ I+ TN  S + LS+     +    +G II I SV G +     + YA+ K  +   +K+LA E     I VN VAP  I T +  ++  D R     + ++ + P  R G   E+++ VAFL    A+Y+TG+   ++GG
Sbjct:   67 ESVLEKIRAEF-GEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQR-----AGILAQVPAGRLGGAQEIANAVAFLASDEAAYITGETLHVNGG 240          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_ECOLI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Escherichia coli (strain K12) GN=fabG PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.149e-18
Identity = 57/180 (31.67%), Postives = 94/180 (52.22%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            + ++E + +EF G+++ILVNNAG T          E+++ I+ TN  S + LS+     +    +G II I SV G +     + YA+ K  +   +K+LA E     I VN VAP  I T +  ++  D R     + ++ + P  R G   E+++ VAFL    A+Y+TG+   ++GG
Sbjct:   67 ESVLEKIRAEF-GEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQR-----AGILAQVPAGRLGGAQEIANAVAFLASDEAAYITGETLHVNGG 240          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: BACC_BACAM (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus amyloliquefaciens GN=bacC PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.149e-18
Identity = 59/174 (33.91%), Postives = 90/174 (51.72%), Query Frame = -3
Query:  246 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACE-WGKDNIRVNAVAPWIIRTSLIDS--IEKDPRVMEHASRLIPR-TPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYS 755
            G L++L+NNAG  I     E  + D++ ++  N    + +S+ A   +  SG GNII   SV GV+A P    Y ++KG + Q           K NIRVN V P II T L +   +E +   +E   +   +  P+ R G+P E+++V+ FL    +SY+TG     DGGY+
Sbjct:   79 GGLDVLINNAGIEIVAPIHEMELSDWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQTDAFYRPSIIAKHNIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVMLFLASDLSSYMTGSAITADGGYT 252          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_RICBR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia bellii (strain RML369-C) GN=fabG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.147e-17
Identity = 57/167 (34.13%), Postives = 91/167 (54.49%), Query Frame = -3
Query:  252 KLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 752
            KL+ILV NAG T    A     EDF  ++  N ++ + L++ A   +  +  G II I+S+ GV   P  + Y ++K  +  +TK+LA E     I VNAVAP  I++ + D +  + +  E  +R IP+      G P ++++ VAFL    +SY+TGQ   ++GG
Sbjct:   76 KLDILVCNAGITKDTLAIRMKNEDFDQVIDINLKANFILNREAIKKMMTNRYGRIINITSIVGVSGNPGQANYCASKAGLIGMTKSLAYEVATRGITVNAVAPGFIKSDMTDKLNDEQK--EAITRKIPKGTY---GMPEDIANAVAFLASKQSSYITGQTLHVNGG 237          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
FABG_STAES3.943e-1829.443-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAEQ3.943e-1829.443-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_SALTY3.943e-1832.223-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
FABG_SALTI3.943e-1832.223-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
YOHF_ECOLI5.149e-1833.53Uncharacterized oxidoreductase yohF OS=Escherichia... [more]
LVR_LEIAQ5.149e-1833.70Levodione reductase OS=Leifsonia aquatica GN=lvr P... [more]
FABG_SHIFL5.149e-1831.673-oxoacyl-[acyl-carrier-protein] reductase OS=Shig... [more]
FABG_ECOLI5.149e-1831.673-oxoacyl-[acyl-carrier-protein] reductase OS=Esch... [more]
BACC_BACAM5.149e-1833.91Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
FABG_RICBR1.147e-1734.133-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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