CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG4_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 4 (Fragment) OS=Brassica napus GN=bkr4 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.147e-17
Identity = 60/182 (32.97%), Postives = 95/182 (52.20%), Query Frame = -3
Query:  243 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCL-PAASYVTGQVFCIDGGYSV 785
            +M+T   ++ G ++++VNNAG T+           +  +M  N    +  SQ A  ++     G II I+SV G+I     + YA+ K  +   +K  A E    NI VN V P  I + +   + +D   ME   +++   P+ R G+P +V+ +V FL L PAASY+TGQ F IDGG ++
Sbjct:   82 MMKTAVDKW-GTIDVVVNNAGDTL---LIRMKKSQWDEVMDLNLTGVFLCSQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED---ME--KKILGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQTFTIDGGIAI 254          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_RICCN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia conorii GN=fabG PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.498e-17
Identity = 55/167 (32.93%), Postives = 88/167 (52.69%), Query Frame = -3
Query:  252 KLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 752
            KL+ILV NAG T    A     EDF  ++  N ++ + L++ A   +  +  G II ISS+ G+   P  + Y ++K  +  +TK+L+ E     I VN VAP  I++ + D + +  R       ++ + P+   G P +V+  VAFL    ASY+TGQ   ++GG
Sbjct:   76 KLDILVCNAGITSDTLAIRMKDEDFDKVIDINLKANFILNREAIKKMIQNRYGRIINISSIVGISGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNTVAPGFIKSDMTDKLNEKQR-----EAIVQKIPLGTYGMPEDVAHAVAFLASDQASYITGQTIHVNGG 237          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: PECR_PONAB (Peroxisomal trans-2-enoyl-CoA reductase OS=Pongo abelii GN=PECR PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.957e-17
Identity = 59/175 (33.71%), Postives = 89/175 (50.86%), Query Frame = -3
Query:  243 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNI--IFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWII--RTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 755
            GK+N LVNN G      A   + + +  ++ TN    +++ +  Y        G+I  I +S  TG+   PL     + +  +  LTK+LA EW    +R+N VAP +I  +T++ +         E + + IP   I   G P EVSSVV FL  PAAS++TGQ   +DGG S+
Sbjct:   99 GKINFLVNNGGGQFLSLAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVSIKTGL---PLAVHSGAARAGVYNLTKSLALEWACSGVRINCVAPGVIYSQTAVENYGSYGQSFFEESFQKIPAKRI---GVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSL 267          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_AQUAE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Aquifex aeolicus GN=fabG PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.957e-17
Identity = 59/179 (32.96%), Postives = 93/179 (51.96%), Query Frame = -3
Query:  252 KLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 788
            K  E + +  DG ++ILVNNAG T  K     ++ D+  ++  N    + ++Q +   +     G I+ ISSV G         Y++TK  +   TK+LA E    N+ VNAVAP  I T +   + ++ +      +   + P+ R G P EV++VV FLC   ASY+TG+V  ++GG
Sbjct:   74 KAFEEIYNLVDG-IDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIK-----QKYKEQIPLGRFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: Y182_METEA (Uncharacterized oxidoreductase MexAM1_META1p0182 OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=MexAM1_META1p0182 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.338e-17
Identity = 62/178 (34.83%), Postives = 93/178 (52.25%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            L+E    +F G+L++LVNN+G        E T E +  I   N       +Q A   L     G+II ISSV   + +P  ++Y+ TKGA+N ++  LA E     IRVN V+P  + T    +       ME  + L+ +TP+ R G+P++++ VVAFL    A +VTG+V    GG
Sbjct:   74 LVEAAVQQF-GRLDVLVNNSGVYEFAAIEEVTEEHYRRIFDVNVLGVLLATQAASKHL--GEGGSIINISSVVTDVLMPTSAVYSGTKGALNAISGVLANELAPRKIRVNVVSPGYVVTEGTHTAGIAGSEME--AGLVAQTPLGRSGQPDDIAGVVAFLASDDARWVTGEVINASGG 246          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: HDHA_CLOSO (NADP-dependent 7-alpha-hydroxysteroid dehydrogenase OS=Clostridium sordellii PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.338e-17
Identity = 59/187 (31.55%), Postives = 98/187 (52.41%), Query Frame = -3
Query:  243 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMED---FSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEV-SSVVAFLCLPAASYVTGQVFCIDGGYSV 791
            +++++T+    +GK++ILVNN GT  P++  +    D   F  +   N  S Y LS+L  P +  +  G+I+ ISSV G I       Y  +K  +N +TK +A ++ K  IR NAV P +I T    +   D    E     +   P+ R G P ++ +SV+ F+    +SY+TG +  + GGY++
Sbjct:   71 KEMIDTIIKN-EGKIDILVNNFGTGRPEKDLDLVNGDEDTFFELFNYNVGSVYRLSKLIIPHMIENKGGSIVNISSVGGSIPDISRIGYGVSKSGVNNITKQIAIQYAKYGIRCNAVLPGLIATDAAMNSMPD----EFRKSFLSHVPLNRIGNPEDIANSVLFFVPSEDSSYITGSILEVSGGYNL 252          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_VIBHA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Vibrio harveyi GN=fabG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.338e-17
Identity = 52/168 (30.95%), Postives = 83/168 (49.40%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G ++ILVNNAG T          ++++ I+ TN    Y +S+     +     G II + SV G +     + YA+ K  +   TK++A E     + VN VAP  I T +  ++  D R     +  +   P  R G+P E++S V FL  P A+Y+TG+   ++GG
Sbjct:   78 GAIDILVNNAGITRDNLLMRMKDDEWNDIINTNLTPIYRMSKAVLRGMMKKRAGRIINVGSVVGTMGNAGQTNYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDDQR-----AATLSNVPAGRLGDPREIASAVVFLASPEAAYITGETLHVNGG 240          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG3_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 3, chloroplastic OS=Brassica napus GN=bkr3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.338e-17
Identity = 58/184 (31.52%), Postives = 94/184 (51.09%), Query Frame = -3
Query:  243 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCL-PAASYVTGQVFCIDGGYSV 791
            + +M+T    + G ++++VNNAG T            +  ++  N    +  +Q A  ++     G II I+SV G+I     + YA+ K  +   +K  A E    NI VN V P  I + +   + +D   ME   +++   P+ R G+P +V+ +V FL L PAASY+TGQ F IDGG ++
Sbjct:  138 EAMMKTAIDAW-GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED---ME--KKILGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQAFTIDGGIAI 315          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG1_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic OS=Brassica napus GN=gbkr1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.338e-17
Identity = 58/184 (31.52%), Postives = 94/184 (51.09%), Query Frame = -3
Query:  243 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCL-PAASYVTGQVFCIDGGYSV 791
            + +M+T    + G ++++VNNAG T            +  ++  N    +  +Q A  ++     G II I+SV G+I     + YA+ K  +   +K  A E    NI VN V P  I + +   + +D   ME   +++   P+ R G+P +V+ +V FL L PAASY+TGQ F IDGG ++
Sbjct:  143 EAMMKTAIDAW-GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED---ME--KKILGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQAFTIDGGIAI 320          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.338e-17
Identity = 56/182 (30.77%), Postives = 98/182 (53.85%), Query Frame = -3
Query:  252 RQKLMETVCSEFDGKLNILVNNAGTT-IPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 794
            R++L+ T  +   G ++ILV+NA       +  + T E +  I+  N ++   +++   P ++  G G+++ ++S+           Y  +K A+  LTKNLA E    NIRVN +AP +I+TS   ++ +D    E+   +I +  I R G+P E + +V+FLC   ASY+TG+   + GG
Sbjct:   78 RERLVATALN-LHGGIDILVSNAAVNPFFGKLMDVTEEVWDKILDINVKAMALMTKAVVPEMEKRGGGSVVIVASIAAFNPFSGLGPYNVSKTALVGLTKNLALELAAQNIRVNCLAPGLIKTSFSKALWEDKAQEEN---IIQKLRIRRLGKPEECAGIVSFLCSEDASYITGETVVVAGG 255          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
FABG4_BRANA1.147e-1732.973-oxoacyl-[acyl-carrier-protein] reductase 4 (Frag... [more]
FABG_RICCN1.498e-1732.933-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
PECR_PONAB1.957e-1733.71Peroxisomal trans-2-enoyl-CoA reductase OS=Pongo a... [more]
FABG_AQUAE1.957e-1732.963-oxoacyl-[acyl-carrier-protein] reductase OS=Aqui... [more]
Y182_METEA3.338e-1734.83Uncharacterized oxidoreductase MexAM1_META1p0182 O... [more]
HDHA_CLOSO3.338e-1731.55NADP-dependent 7-alpha-hydroxysteroid dehydrogenas... [more]
FABG_VIBHA3.338e-1730.953-oxoacyl-[acyl-carrier-protein] reductase OS=Vibr... [more]
FABG3_BRANA3.338e-1731.523-oxoacyl-[acyl-carrier-protein] reductase 3, chlo... [more]
FABG1_BRANA3.338e-1731.523-oxoacyl-[acyl-carrier-protein] reductase 1, chlo... [more]
DHRS4_RABIT3.338e-1730.77Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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