CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.338e-17
Identity = 58/186 (31.18%), Postives = 103/186 (55.38%), Query Frame = -3
Query:  243 QKLMETVCSEFDGKLNILVNNAGTT-IPKEATEFTMEDFSTIMTTNFESAYHLSQLAYP-LLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRT-SLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 791
            Q L++T    F G L+++VNN+G   +     E ++ED+  ++  N    +  ++ A   ++K +  GN++ ISSV   I  P+   Y+++KG +  +T+ LA  +    IRVNA+AP  I T S +D+ +++ R      + + + P+   G+P EV++  A+L    ASYVTG    +DGG ++
Sbjct:   73 QALLDTALEHF-GTLDVMVNNSGFNGVEAMPHEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYSTSKGGIKMMTETLALNYADKGIRVNAIAPGTIATESNVDTKKEESR-----QKQLKKIPMKAFGKPEEVAAAAAWLVSEEASYVTGATLFVDGGMTL 252          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: HCDR_XANP2 (2-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecD PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 57/173 (32.95%), Postives = 86/173 (49.71%), Query Frame = -3
Query:  246 GKLNILVNNAGTTIPKEATEF---TMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYS 755
            G +++LVNNAG T   EA       +E F  +M  N    +   +   P +   G G I+ I+SV  ++A P  S Y ++KGA+ QLTK++A ++    IR NAV P +I T +       P + +     IP+  I   G   +V+  V FL    A+YV G    +DG Y+
Sbjct:   79 GAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEI---GTAAQVADAVMFLAGEDATYVNGAALVMDGAYT 248          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_HAEIN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Haemophilus influenzae GN=fabG PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 59/180 (32.78%), Postives = 87/180 (48.33%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            + L+E + ++F G ++ILVNNAG T          E++  IM TN  S YHLS+     +     G II I SV G    P  + Y + K  +   +K+LA E     I VN VAP  I T + + +       E  + ++   P  R GE  +++  VAFL    A Y+TG    ++GG
Sbjct:   65 ETLLEQIKNDF-GDIDILVNNAGITRDNLLMRMKDEEWFDIMQTNLTSVYHLSKAMLRSMMKKRFGRIINIGSVVGSTGNPGQTNYCAAKAGVVGFSKSLAKEVAARGITVNVVAPGFIATDMTEVLTD-----EQKAGILSNVPAGRLGEAKDIAKAVAFLASDDAGYITGTTLHVNGG 238          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG2_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplastic OS=Brassica napus GN=bkr2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 56/172 (32.56%), Postives = 88/172 (51.16%), Query Frame = -3
Query:  243 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCL-PAASYVTGQVFCIDGGYSV 755
            G ++++VNNAG T            +  ++  N    +  +Q A  ++     G II I+SV G+I     + YA+ K  +   +K  A E    NI VN V P  I + +   + +D   ME   +++   P+ R G+P +V+ +V FL L PAASY+TGQ F IDGG ++
Sbjct:  162 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED---ME--KKILGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQAFTIDGGIAI 328          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: PECR_HUMAN (Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sapiens GN=PECR PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.693e-17
Identity = 56/172 (32.56%), Postives = 85/172 (49.42%), Query Frame = -3
Query:  243 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRT-SLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 755
            GK+N LVNN G      A   + + +  ++ TN    +++ +  Y        G+I+ I   T     PL     + +  +  LTK+LA EW    IR+N VAP +I + + +++     +     S    + P  R G P EVSSVV FL  PAAS++TGQ   +DGG S+
Sbjct:   99 GKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA-GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGS--FQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSL 267          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DHGB_BACME (Glucose 1-dehydrogenase B OS=Bacillus megaterium GN=gdhB PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.693e-17
Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = -3
Query:  252 LMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSV-TGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 785
            L+++   EF GKL++++NNAG   P  + E ++ D++ ++ TN   A+  S+ A      +   G +I +SSV    I  PL   YA++KG M  +T+ LA E+    IRVN + P  I T +      DP        +IP   I   GEP E+++ VA+L    ASYVTG     DGG
Sbjct:   76 LVQSAIKEF-GKLDVMINNAGMENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEWKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYI---GEPEEIAA-VAWLASSEASYVTGITLFADGG 250          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: ARDH_CANAL (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Candida albicans GN=ARD1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.693e-17
Identity = 61/179 (34.08%), Postives = 96/179 (53.63%), Query Frame = -3
Query:  249 SEFDGKLN-ILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQ-LAYPLLKASGNGNIIFISSVTGVIA---VPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNE-VSSVVAFLCLPAASYVTGQVFCIDGGY 767
            +E  GK++ +LVN AG      A E+  ++   +M  N   ++++SQ  A PL++ +  G+II I S++G I     P C +Y  +K  +  L ++LACEW K NIRVN ++P  I T L  ++      M+  +    + P+ R  EP E V S++      A+SY TG    +DGGY
Sbjct:  103 NEHHGKISSVLVNTAGYAENFPAEEYPAKNAENLMKVNGLGSFYVSQAFARPLIQNNMTGSIILIGSMSGTIVNDPQPQC-MYNMSKAGVIHLARSLACEWAKYNIRVNTLSPGYILTPLTRNVISGHTEMK--TEWESKIPMKRMAEPKEFVGSILYLASESASSYTTGHNLVVDGGY 278          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DCXR_MESAU (L-xylulose reductase OS=Mesocricetus auratus GN=DCXR PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.436e-17
Identity = 56/172 (32.56%), Postives = 86/172 (50.00%), Query Frame = -3
Query:  243 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQL-AYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 755
            G +++LVNNA   + +   E T E F      N  +   +SQ+ A  ++     G I+ +SS     A+   S+Y STKGA++ LTK +A E G   IRVNAV P ++ TS+  +   DP     A  ++ R P+ +  E   V   + FL    ++  TG    +DGG+ V
Sbjct:   75 GPVDLLVNNAAVALLQPFLEVTKEAFDMSFNVNLRAVIQVSQIVARGMIARGAPGAIVNVSSQASQRALANHSVYCSTKGALDMLTKMMALELGPHKIRVNAVNPTVVMTSMGRTNWSDP---HKAKVMLDRIPLGKFAEVENVVDAILFLLSHRSNMTTGSTLPVDGGFLV 243          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DCXR_HUMAN (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.436e-17
Identity = 57/170 (33.53%), Postives = 85/170 (50.00%), Query Frame = -3
Query:  249 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 755
            G +++LVNNA   + +   E T E F      N  +   +SQ+    L A G  G I+ +SS     AV   S+Y STKGA++ LTK +A E G   IRVNAV P ++ TS+  +   DP     A  ++ R P+ +  E   V + + FL    +   TG    ++GG+
Sbjct:   75 GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDP---HKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGF 241          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: ARDH_CANTR (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Candida tropicalis GN=ARD PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.436e-17
Identity = 61/179 (34.08%), Postives = 96/179 (53.63%), Query Frame = -3
Query:  249 SEFDGKL-NILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQ-LAYPLLKASGNGNIIFISSVTGVIA---VPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNE-VSSVVAFLCLPAASYVTGQVFCIDGGY 767
            +E  GK+ ++L+N AG      A E+  ++   IM  N   ++++SQ  A PL++ +  G+II I S++G I     P C +Y  +K  +  L ++LACEW K NIRVN ++P  I T L  ++      M+  +    + P+ R  EP E V S++      A+SY TG    +DGGY
Sbjct:  104 NEHHGKVASVLINTAGYAENFPAEEYPAKNAENIMKVNGLGSFYVSQAFARPLIQNNMTGSIILIGSMSGTIVNDPQPQC-MYNMSKAGVIHLARSLACEWAKYNIRVNTLSPGYILTPLTRNVISGHTEMK--TEWESKIPMKRMAEPKEFVGSILYLASDSASSYTTGHNLVVDGGY 279          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
DHG2_BACSU3.338e-1731.18Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]
HCDR_XANP24.359e-1732.952-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]
FABG_HAEIN4.359e-1732.783-oxoacyl-[acyl-carrier-protein] reductase OS=Haem... [more]
FABG2_BRANA4.359e-1732.563-oxoacyl-[acyl-carrier-protein] reductase 2, chlo... [more]
PECR_HUMAN5.693e-1732.56Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sa... [more]
DHGB_BACME5.693e-1735.00Glucose 1-dehydrogenase B OS=Bacillus megaterium G... [more]
ARDH_CANAL5.693e-1734.08D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
DCXR_MESAU7.436e-1732.56L-xylulose reductase OS=Mesocricetus auratus GN=DC... [more]
DCXR_HUMAN7.436e-1733.53L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ... [more]
ARDH_CANTR7.436e-1734.08D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
back to top