CF835860

Overview
NameCF835860
Unique NameCF835860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: RHLG_PSEAE (Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase OS=Pseudomonas aeruginosa GN=rhlG PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.711e-17
Identity = 58/177 (32.77%), Postives = 91/177 (51.41%), Query Frame = -3
Query:  249 EFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGN----IIFISSVTGVIAV-PLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 764
            E   +L+ILVNNAGT+       + +  +  +M  N  S +   Q   PLL+ S +      +I I SV G+ A+      Y  +K A++QL++ LA E   ++I VN +AP    + +   I  DP+ +E  S  I   P+ R G P E++++   L   A +Y+TG V  IDGG+
Sbjct:   81 ELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASI---PMGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGGF 254          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: IDNO_ECOLI (Gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=idnO PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.711e-17
Identity = 50/171 (29.24%), Postives = 87/171 (50.88%), Query Frame = -3
Query:  243 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 755
            G +++LVNNAG       TEF  ++++ ++  N  + + +SQ     +     G +I I S+   +     + YA++KGA+  LT+ +  E  + NI+VN +AP   +T +  ++ +D       + L  RTP  R G+P E+     FL   A+ +V G +  +DGG  V
Sbjct:   85 GPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDE---AFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLV 252          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: IDNO_ECOL6 (Gluconate 5-dehydrogenase OS=Escherichia coli O6 GN=idnO PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.711e-17
Identity = 50/171 (29.24%), Postives = 87/171 (50.88%), Query Frame = -3
Query:  243 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSV 755
            G +++LVNNAG       TEF  ++++ ++  N  + + +SQ     +     G +I I S+   +     + YA++KGA+  LT+ +  E  + NI+VN +AP   +T +  ++ +D       + L  RTP  R G+P E+     FL   A+ +V G +  +DGG  V
Sbjct:   85 GPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDE---AFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLV 252          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_RICPR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia prowazekii GN=fabG PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.711e-17
Identity = 57/176 (32.39%), Postives = 90/176 (51.14%), Query Frame = -3
Query:  252 CSEFDGK---LNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 770
            CS    K   L+ILV NAG T    A     +DF  ++  N ++ + L++ A   +     G II ISS+ G+   P  + Y ++K  +  +TK+L+ E     I VNAVAP  I++ + D + +  R       ++ + P+   G P +V+  VAFL    ASY+TGQ   ++GG
Sbjct:   67 CSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQR-----EAIVQKIPLGTYGIPEDVAYAVAFLASNNASYITGQTLHVNGG 237          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: FABG_RICTY (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia typhi GN=fabG PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.268e-16
Identity = 54/166 (32.53%), Postives = 87/166 (52.41%), Query Frame = -3
Query:  252 LNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 749
            L+ILV NAG T    A     +DF  ++  N ++ + L++ A   +     G II ISS+ G+   P  + Y ++K  +  +TK+L+ E     I VNAVAP  I++ + D + +  R       ++ + P+   G P +V+  VAFL    ASY+TGQ   ++GG
Sbjct:   77 LDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQR-----EAIVQKIPLGTYGIPEDVAYAVAFLASNHASYITGQTLHVNGG 237          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: DCXR_BOVIN (L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.268e-16
Identity = 55/170 (32.35%), Postives = 84/170 (49.41%), Query Frame = -3
Query:  249 GKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQL-AYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 755
            G +++LVNNA     +   E T E +    + N  +   +SQ+ A  L+     G I+ +SS      +   S+Y STKGA++ LTK +A E G   IRVNAV P ++ T +  +   DP   + A  ++ R P+ R  E   V   + FL    +S  TG    +DGG+
Sbjct:   75 GPVDLLVNNAAVAFLQPFLEVTKEAYDMSFSVNLRAVIQVSQIVARGLIARGAPGVIVNVSSQASQRGLTNHSVYCSTKGALDTLTKVMAVELGPHKIRVNAVNPTVVMTPMGQAAWSDP---QKAKAMLDRIPLGRFAEVENVVDTILFLLSDRSSMTTGSTVPVDGGF 241          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: YHDF_BACSU (Uncharacterized oxidoreductase yhdF OS=Bacillus subtilis GN=yhdF PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16
Identity = 62/181 (34.25%), Postives = 93/181 (51.38%), Query Frame = -3
Query:  252 QKLMETVCSEFDGKLNILVNNAGTTIPKEAT-EFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 791
            Q + +TV  +  GKL+ILVNNA    P+++    + E       TN  S +H+++ A P L+      II  +S+T          Y+STKGA+   T+++A       IRVNAVAP  I T LI +   + +V +H       TP+ RPG+P E +     L    +SY+TGQ   ++GG
Sbjct:  112 QAVQQTV--DHFGKLDILVNNAAEQHPQDSILNISTEQLEKTFRTNIFSMFHMTKKALPHLQEGCA--IINTTSITAYEGDTALIDYSSTKGAIVSFTRSMAKSLADKGIRVNAVAPGPIWTPLIPATFPEEKVKQHGL----DTPMGRPGQPVEHAGAYVLLASDESSYMTGQTIHVNGG 284          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: ARDH_PICST (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Pichia stipitis GN=ARDH PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16
Identity = 61/179 (34.08%), Postives = 95/179 (53.07%), Query Frame = -3
Query:  249 SEFDGKL-NILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQ-LAYPLLKASGNGNIIFISSVTGVIA---VPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNE-VSSVVAFLCLPAASYVTGQVFCIDGGY 767
            +E  GK+ ++L+N AG      A  +   +  +IM  N   ++++SQ  A PL++ +  G+II I S++G I     P C +Y  +K  +  L ++LACEW K NIRVN ++P  I T L  ++      M+ A     + P+ R  EP E V S++      A+SY TG    +DGGY
Sbjct:  100 NEHHGKIADLLINTAGYCENFPAETYPATNAESIMKVNGLGSFYVSQSFARPLIQNNLRGSIILIGSMSGTIVNDPQPQC-MYNMSKAGVIHLVRSLACEWAKYNIRVNTLSPGYILTPLTRNVISGHTEMKEAWE--SKIPMKRMAEPKEFVGSILYLASETASSYTTGHNLVVDGGY 275          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: YXBG_BACSU (Uncharacterized oxidoreductase yxbG OS=Bacillus subtilis GN=yxbG PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.163e-16
Identity = 60/174 (34.48%), Postives = 97/174 (55.75%), Query Frame = -3
Query:  252 GKLNILVNNAGTTIPK-EATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI--EKDPRVME---HASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGG 755
            G ++IL NNAG      +  E+ ++ F  I+  +    +  S+   PL+  +G G+II  SS++G  A    S Y + KG +  LTK +A ++ ++ IRVN+++P  I T LID +   K+  + E    A++ I  TP+ R G+P E+++V  FL    +SYVTG+    DGG
Sbjct:   82 GTIDILFNNAGVDQEGGKVHEYPVDLFDRIIAVDLRGTFLCSKYLIPLMLENG-GSIINTSSMSGRAADLDRSGYNAAKGGITNLTKAMAIDYARNGIRVNSISPGTIETPLIDKLAGTKEQEMGEQFREANKWI--TPLGRLGQPKEMATVALFLASDDSSYVTGEDITADGG 252          
BLAST of CF835860 vs. ExPASy Swiss-Prot
Match: SOU1_SCHPO (Sorbose reductase sou1 OS=Schizosaccharomyces pombe GN=sou1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.163e-16
Identity = 63/188 (33.51%), Postives = 95/188 (50.53%), Query Frame = -3
Query:  249 RQKLMETV---CSEFDGKLNILVNNAGTTIPKEATEFTMEDFST-IMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIA--VPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGY 794
            R  ++ET      E  G+L++++ NAG  IP  + E   ED  T ++  N   AY+ +Q A    K  G G++IF +S++G IA      + Y +TK A+  L + LA EW     RVN+V+P  I T L    +++ R      +    TP  R G P+E+     +L   A+SY TG    +DGGY
Sbjct:   71 RSAVIETTNQAVEELGGRLDVMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLIFTASMSGHIANWPQQWASYHATKAAVKHLARALAVEWAPF-ARVNSVSPGYIDTDLTLYADENLR-----KKWKEYTPQARIGLPDELPGAYLYLASDASSYCTGSDIIVDGGY 252          
The following BLAST results are available for this feature:
BLAST of CF835860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RHLG_PSEAE9.711e-1732.77Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-... [more]
IDNO_ECOLI9.711e-1729.24Gluconate 5-dehydrogenase OS=Escherichia coli (str... [more]
IDNO_ECOL69.711e-1729.24Gluconate 5-dehydrogenase OS=Escherichia coli O6 G... [more]
FABG_RICPR9.711e-1732.393-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
FABG_RICTY1.268e-1632.533-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
DCXR_BOVIN1.268e-1632.35L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV... [more]
YHDF_BACSU1.657e-1634.25Uncharacterized oxidoreductase yhdF OS=Bacillus su... [more]
ARDH_PICST1.657e-1634.08D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
YXBG_BACSU2.163e-1634.48Uncharacterized oxidoreductase yxbG OS=Bacillus su... [more]
SOU1_SCHPO2.163e-1633.51Sorbose reductase sou1 OS=Schizosaccharomyces pomb... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835860 ID=CF835860; Name=CF835860; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTTTCTTTTAAATTCGAAATTTATCATTCAACATTAG
ATGAAAAGATATAAAATATTCAGGGACAATGGGTGACAACATAGACAAAT
AAATTGTATAGCACACAAACTTTTTCTCGTTAACAGAGAGCTTATTAGAA
TGGCATCCATAACATGAAGACCTAAACTGACTTTGGAGGAACAGCCAGAA
AATTTAAAAGATCATTTCATGTCCGTAGGGCTAAAATCCATTCACGGAGT
ATCCTCCATCAATACAAAAAACCTGTCCGGTGACGTATGAAGCGGCTGGC
AAACATAGGAATGCTACCACTGACGAAACCTCATTAGGTTCTCCTGGACG
AGGTATAGGAGTACGGGGTATCAAACGACTAGCGTGTTCCATGACCCTTG
GATCCTTTTCTATGGAATCAATGAGAGAGGTTCTAATGATCCATGGAGCA
ACTGCATTCACGCGAATGTTGTCCTTTCCCCACTCACATGCCAAGTTCTT
TGTCAGTTGATTCATTGCTCCTTTAGTTGATGCATAGATGGAACATAGAG
GTACAGCTATAACACCCGTGACAGAGGAGATAAAAATGATGTTTCCATTT
CCTGATGCTTTGAGTAGGGGGTATGCAAGTTGGGACAGGTGGTAAGCAGA
CTCGAAATTGGTGGTCATTATAGTCGAGAAATCCTCCATGGTAAATTCTG
TGGCTTCCTTAGGAATGGTGGTTCCAGCATTGTTTACAAGGATGTTGAGC
TTGCCATCAAATTCAGAACATACAGTCTCCATCAACTTTTGACGCT
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