CF835869

Overview
NameCF835869
Unique NameCF835869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:82..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_BURCC (Malate dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.257e-53
Identity = 111/217 (51.15%), Postives = 144/217 (66.36%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            MAK   RV VTGAAGQI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DD
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDD 213          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_BURCA (Malate dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=mdh PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.257e-53
Identity = 111/217 (51.15%), Postives = 144/217 (66.36%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            MAK   RV VTGAAGQI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DD
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDD 213          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_STRMK (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=mdh PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.253e-53
Identity = 110/205 (53.66%), Postives = 140/205 (68.29%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 692
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPL+ G+V T DA  A    +IA++VG  PR  GMERKD++ +N  I+ AQ +AL + A+ + KVLVV NPANTNA I  + AP +  +N T + RLDHNRAL Q+S KL   V  ++ +++WGNHS + YPD   AT + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPVDKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDADIALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVASRDVKVLVVGNPANTNAYIAMKSAPDLKPENFTAMLRLDHNRALSQLSTKLGKPVGGMEKLVVWGNHSPTMYPDYRFATADGAS 206          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_STRM5 (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.253e-53
Identity = 110/205 (53.66%), Postives = 140/205 (68.29%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 692
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPL+ G+V T DA  A    +IA++VG  PR  GMERKD++ +N  I+ AQ +AL + A+ + KVLVV NPANTNA I  + AP +  +N T + RLDHNRAL Q+S KL   V  ++ +++WGNHS + YPD   AT + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPVDKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDADIALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVASRDVKVLVVGNPANTNAYIAMKSAPDLKPENFTAMLRLDHNRALSQLSAKLGKPVGGMEKLVVWGNHSPTMYPDYRFATADGAS 206          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_MYCUA (Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=mdh PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.255e-53
Identity = 108/216 (50.00%), Postives = 145/216 (67.13%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV   +DA +   G N+A++VG  PR  GMER D++  N +I+ AQ  AL + AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K  V V+D+K + IWGNHS++QYPD+ HA V      K   E+V D
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGSDANKIFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEVAADDIRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGVAVTDIKKMTIWGNHSATQYPDLFHAEVK----GKNAAEVVND 212          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_MYCMM (Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mdh PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.255e-53
Identity = 108/216 (50.00%), Postives = 145/216 (67.13%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV   +DA +   G N+A++VG  PR  GMER D++  N +I+ AQ  AL + AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K  V V+D+K + IWGNHS++QYPD+ HA V      K   E+V D
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGSDANKIFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEVAADDIRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGVAVTDIKKMTIWGNHSATQYPDLFHAEVK----GKNAAEVVND 212          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_BURPP (Malate dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=mdh PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.255e-53
Identity = 109/217 (50.23%), Postives = 142/217 (65.44%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            MAK   RV VTGAAGQI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   AT    A  + + +L+ DD
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLSGVVITDDPEVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGKALNKVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFAT----AEGQDLTKLINDD 213          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_XANCB (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=mdh PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.475e-53
Identity = 110/205 (53.66%), Postives = 139/205 (67.80%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 692
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++    A  AL GV MEL D AFPL+ G+V T DA  A   +++A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  E AP +  KN T + RLDHNRAL Q+S KL   V  ++ +++WGNHS + YPD   AT + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMESAPDLNPKNFTAMLRLDHNRALSQLSLKLGKPVGGIEKLVVWGNHSPTMYPDYRFATSDGAS 206          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.475e-53
Identity = 110/212 (51.89%), Postives = 142/212 (66.98%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+IP A +AL GV MEL D AFPL+ G+ AT D   A    + A++VG  PRK GMER+D++  N  I+  Q  AL + A  + KVLVV NPANTNALI  + AP +  +N T +TRLDHNRA  Q+++K    V  ++ + +WGNHSS+ +PD+ HA V+     +P  ELV
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVD----GRPALELV 209          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.475e-53
Identity = 110/212 (51.89%), Postives = 142/212 (66.98%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+IP A +AL GV MEL D AFPL+ G+ AT D   A    + A++VG  PRK GMER+D++  N  I+  Q  AL + A  + KVLVV NPANTNALI  + AP +  +N T +TRLDHNRA  Q+++K    V  ++ + +WGNHSS+ +PD+ HA V+     +P  ELV
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVD----GRPALELV 209          
The following BLAST results are available for this feature:
BLAST of CF835869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
MDH_BURCC3.257e-5351.15Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_BURCA3.257e-5351.15Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_STRMK4.253e-5353.66Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]
MDH_STRM54.253e-5353.66Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]
MDH_MYCUA7.255e-5350.00Malate dehydrogenase OS=Mycobacterium ulcerans (st... [more]
MDH_MYCMM7.255e-5350.00Malate dehydrogenase OS=Mycobacterium marinum (str... [more]
MDH_BURPP7.255e-5350.23Malate dehydrogenase OS=Burkholderia phytofirmans ... [more]
MDH_XANCB9.475e-5353.66Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_THETH9.475e-5351.89Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]
MDH_THET89.475e-5351.89Malate dehydrogenase OS=Thermus thermophilus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835869 ID=CF835869; Name=CF835869; organism=Citrus sinensis; type=EST; length=730bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
GCCTGTCCGTGAGCTTGTCAAGGATGATGC
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