CF835870

Overview
NameCF835870
Unique NameCF835870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:12..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835870 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17
Identity = 50/111 (45.05%), Postives = 66/111 (59.46%), Query Frame = -1
Query:  230 EKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 553
            ++   LGL   AKI   A A     +    P  A  KA+  AGL    +D +E+NEAFA  +L   K LGL     +KVN++GGA+ALGHPLGCSGARI  TLL ++ +K+
Sbjct:  254 DRAKALGLTPRAKIRAMAVAGCDAAIMGYGPVPATQKALKRAGLTIGDIDLFELNEAFAAQSLPCVKDLGLQDVVDEKVNLNGGAIALGHPLGCSGARISTTLLNLMEEKD 364          
BLAST of CF835870 vs. ExPASy Swiss-Prot
Match: THIK_ENCCU (3-ketoacyl-CoA thiolase, peroxisomal OS=Encephalitozoon cuniculi GN=FOX3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  233 REKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 556
            R +  +LGL V+A+   +      P      P +AI K +   GLE  Q+  +EINEAFA   L   + L +  D+VN +GG++ALGHP+G SGARI+ TLL V++ +
Sbjct:  248 RRRADELGLPVVAEFIDFIAVGLKPRDMGLGPVVAIEKLLKRNGLEKDQISYFEINEAFASQVLCCLRKLQIGEDRVNRYGGSIALGHPIGASGARIVCTLLSVMKNE 355          
BLAST of CF835870 vs. ExPASy Swiss-Prot
Match: FADA_SHELP (3-ketoacyl-CoA thiolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17
Identity = 50/111 (45.05%), Postives = 66/111 (59.46%), Query Frame = -1
Query:  230 EKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 553
            EK   LGL + A+I   A A     +    P  A  KA+  AGL  + +D  E+NEAFA  +L   K LGL     +KVN++GGA+ALGHPLGCSGARI  TL+ ++  K+
Sbjct:  254 EKAKALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALQRAGLTMNDIDLIELNEAFAAQSLPCVKDLGLMDLVDEKVNLNGGAIALGHPLGCSGARISTTLINLMESKD 364          
BLAST of CF835870 vs. ExPASy Swiss-Prot
Match: FADA_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.514e-17
Identity = 48/110 (43.64%), Postives = 67/110 (60.91%), Query Frame = -1
Query:  230 KVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 550
            K   LGL + A+I   A A     +    P  A  KA++ AGL  + +D  E+NEAFA  +L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TL+ ++ +K+
Sbjct:  255 KARALGLTIRARIRSMAVAGCDAAIMGYGPVPATKKALARAGLSVADLDLIELNEAFAAQSLPCVKDLGLQDVVDEKINLNGGAIALGHPLGCSGARISTTLINLMEEKD 364          
BLAST of CF835870 vs. ExPASy Swiss-Prot
Match: THIM_BOVIN (3-ketoacyl-CoA thiolase, mitochondrial OS=Bos taurus GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 49/129 (37.98%), Postives = 68/129 (52.71%), Query Frame = -1
Query:  167 EKVLKLGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXGASALVVE 553
            + V K     +A+I GY  +   P +    P  AI  A+   GL    +D  E+NEAFA   LA +K L L+P K NV+GGA+ALGHPL  SG+RI   L+  LR++  KY             A+++E
Sbjct:  266 DAVKKHNFTPLARIVGYFVSGCDPTIMGIGPVPAISGALKKTGLSLKDMDLVEVNEAFAPQYLAVEKSLNLDPSKTNVNGGAIALGHPLAGSGSRITAHLVHELRRRGGKYAVGSACIGGGQGIAVIIE 394          
BLAST of CF835870 vs. ExPASy Swiss-Prot
Match: THIL_ZOORA (Acetyl-CoA acetyltransferase OS=Zoogloea ramigera GN=phbA PE=1 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = -1
Query:  233 GLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 535
            G+Q + +I  +A     P++  T P  A  KA+  AG +   +D  E NEAFA  A A  K LG +P  VNV+GGA+A+GHP+G SGARIL TLL  ++++
Sbjct:  268 GIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRR 368          
BLAST of CF835870 vs. ExPASy Swiss-Prot
Match: FADA_YERPS (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis GN=fadA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  221 LGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 538
            LGL   A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  259 LGLTPRARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CF835870 vs. ExPASy Swiss-Prot
Match: FADA_YERPP (3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain Pestoides F) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  221 LGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 538
            LGL   A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  259 LGLTPRARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CF835870 vs. ExPASy Swiss-Prot
Match: FADA_YERPN (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  221 LGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 538
            LGL   A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  259 LGLTPRARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CF835870 vs. ExPASy Swiss-Prot
Match: FADA_YERPE (3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  221 LGLQVIAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 538
            LGL   A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  259 LGLTPRARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
The following BLAST results are available for this feature:
BLAST of CF835870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
FADA_AERHH4.991e-1745.053-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
THIK_ENCCU6.519e-1740.743-ketoacyl-CoA thiolase, peroxisomal OS=Encephalit... [more]
FADA_SHELP6.519e-1745.053-ketoacyl-CoA thiolase OS=Shewanella loihica (str... [more]
FADA_SHEFN8.514e-1743.643-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
THIM_BOVIN1.112e-1637.983-ketoacyl-CoA thiolase, mitochondrial OS=Bos taur... [more]
THIL_ZOORA1.112e-1644.55Acetyl-CoA acetyltransferase OS=Zoogloea ramigera ... [more]
FADA_YERPS1.112e-1644.953-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_YERPP1.112e-1644.953-ketoacyl-CoA thiolase OS=Yersinia pestis (strain... [more]
FADA_YERPN1.112e-1644.953-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERPE1.112e-1644.953-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02A17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835870 ID=CF835870; Name=CF835870; organism=Citrus sinensis; type=EST; length=556bp
TTTTTTTTTTTTTTAATTATTATCTTTTTATTGAAGATGAAAGCACCTAT
GAAAAAGAAATGGAGATACAATTGCACAACACCCCACCCAAATGGGCCAT
AATTATCCTCCACAAGAAGGGTGCAACCTCGTTGATAATAATCCGAACAG
AAAATGCTTACACAAGCTCTACAACAAGTGCCGATGCACCTCCTCCTCCG
TTGCAAACGCCACCAACACCGTATTTCCAGTTTTTCTGCCTAAGTACCCC
CAAAAGTGTGACCAAGATACGAGCTCCGCTGCAGCCCAGAGGATGTCCCA
AAGCTACTGCTCCACCATGGACATTAACCTTGTCAGGATTTAGTCCAAGC
AATTTCTGGTTTGCAAGGGCGACGACAGCAAAGGCCTCATTTATTTCGTA
ACAGTCAACTTGAGAAGCCTCCAAGCCAGCATTTGAAATGGCTTTAGGTA
TGGCTAGGGCTGGAGCTGTTGTAAACATCTCTGGTGCCTGAGCAGCATCA
GCATATCCTGTGATCTTGGCGATCACTTGCAAACCCAGCTTAAGTACCTT
CTCTCT
back to top