CF835871

Overview
NameCF835871
Unique NameCF835871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:10..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_BOVIN (Acetyl-CoA acetyltransferase, mitochondrial OS=Bos taurus GN=ACAT1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.908e-22
Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVE 392
            +ADAA  P  F  APA A+PK + +AGL+   +  +E+NEAF+VV LAN K+L ++P KVN++GGAV+LGHP+G SGARI+V L   L+Q   +Y           ASA++++
Sbjct:  310 FADAAVEPIDFPLAPAYAVPKVLKDAGLKKEDITMWEVNEAFSVVVLANIKMLEMDPQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQ--GEYGLASICNGGGGASAMLIQ 420          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_MOUSE (Acetyl-CoA acetyltransferase, mitochondrial OS=Mus musculus GN=Acat1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.984e-21
Identity = 54/113 (47.79%), Postives = 74/113 (65.49%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVE 392
            +ADAA  P  F  APA A+PK +  AGL+   +  +E+NEAF+VV LAN K+L ++P KVN+HGGAV+LGHP+G SGARI+V +   L  K  ++           ASAL++E
Sbjct:  312 FADAAVDPIDFPLAPAYAVPKVLKYAGLKKEDIAMWEVNEAFSVVVLANIKMLEIDPQKVNIHGGAVSLGHPIGMSGARIVVHMAHAL--KPGEFGLASICNGGGGASALLIE 422          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_DANRE (Acetyl-CoA acetyltransferase, mitochondrial OS=Danio rerio GN=acat1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.421e-21
Identity = 52/113 (46.02%), Postives = 77/113 (68.14%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVE 392
            +ADAA AP  F  APA A+PK +  AG++   +  +EINEAF+VV LAN K+L ++PD+VN++GGAV+LGHP+G SGARI+  ++  L  K+ +Y           AS++V++
Sbjct:  308 FADAAVAPIDFPIAPAFAVPKVLKAAGIKKEDIAMWEINEAFSVVVLANIKMLDIDPDRVNINGGAVSLGHPIGMSGARIVGHMVHNL--KSGQYGLAGICNGGGGASSIVIQ 418          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_XENTR (Acetyl-CoA acetyltransferase, mitochondrial OS=Xenopus tropicalis GN=acat1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.286e-20
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVE 392
            +ADAA  P  F  APA A+PK +S AGL+   +  +EINEAF+VV LAN K+L ++P +VNV+GGAV+LGHP+G SGARI+  +  VL  K  ++           ASA+++E
Sbjct:  308 FADAAVDPIDFPIAPAYAVPKLLSEAGLKKEDIAMWEINEAFSVVVLANVKMLDIDPARVNVNGGAVSLGHPIGMSGARIVGHMAHVL--KKGQFGIAGICNGGGGASAVLIE 418          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THILA_XENLA (Acetyl-CoA acetyltransferase A, mitochondrial OS=Xenopus laevis GN=acat1-A PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.680e-20
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVE 392
            +ADAA  P  F  APA A+PK +S AGL+   +  +EINEAF+VV LAN K+LG++P +VN++GGAV+LGHP+G SGARI+  +   L  K  ++           ASA+++E
Sbjct:  308 FADAAVDPIDFPIAPAYAVPKLLSEAGLKKEDIAMWEINEAFSVVVLANIKMLGIDPARVNMNGGAVSLGHPIGMSGARIVGHMAHAL--KKGQFGIAGICNGGGGASAVLIE 418          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THILB_XENLA (Acetyl-CoA acetyltransferase B, mitochondrial OS=Xenopus laevis GN=acat1-B PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.865e-20
Identity = 50/90 (55.56%), Postives = 66/90 (73.33%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            +ADAA  P  F  APA AIPK +S AGL+   +  +EINEAF+VV LAN K+L ++P +VNV+GGAV+LGHP+G SGARI+  +   LR+
Sbjct:  308 FADAAVDPIDFPIAPAYAIPKLLSEAGLKKEDIAMWEINEAFSVVVLANIKMLDIDPARVNVNGGAVSLGHPIGMSGARIVGHMAHALRK 397          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIC_MOUSE (Acetyl-CoA acetyltransferase, cytosolic OS=Mus musculus GN=Acat2 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.857e-19
Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 3
Query:   42 RSQDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            R   ++ A   P +    P  AI +A++ AG     VD +EINEAFA V+ A  K LGLNP+KVN+ GGA+ALGHPLG SG RILVTLL  L +
Sbjct:  279 RIVSWSQAGVEPSVMGVGPIPAIKQAVAKAGWSLEDVDLFEINEAFAAVSAAIAKELGLNPEKVNIDGGAIALGHPLGASGCRILVTLLHTLER 372          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIC_HUMAN (Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 7.058e-19
Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = 3
Query:   42 RSQDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            R   ++     P +    P  AI +A++ AG     VD +EINEAFA V+ A  K LGLNP+KVN+ GGA+ALGHPLG SG RILVTLL  L +
Sbjct:  279 RIVSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLER 372          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIC_RAT (Acetyl-CoA acetyltransferase, cytosolic OS=Rattus norvegicus GN=Acat2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.218e-19
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            ++ A   P +    P  AI +A++ AG     VD +EINEAFA V+ A  K LGL+P+KVN+ GGA+ALGHPLG SG RILVTLL  L +
Sbjct:  283 WSQAGVEPSVMGVGPIPAIKQAVAKAGWSLEDVDVFEINEAFAAVSAAIAKELGLSPEKVNIDGGAIALGHPLGASGCRILVTLLHTLER 372          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.575e-18
Identity = 48/93 (51.61%), Postives = 61/93 (65.59%), Query Frame = 3
Query:   48 QDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            + YA     P++    PA AIP A+  AGL  S VD +EINEAFA  A    + L L P+KVN  GGAVALGHPLGC+GAR ++TLL  L+++
Sbjct:  305 RSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRR 397          
The following BLAST results are available for this feature:
BLAST of CF835871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
THIL_BOVIN8.908e-2246.90Acetyl-CoA acetyltransferase, mitochondrial OS=Bos... [more]
THIL_MOUSE1.984e-2147.79Acetyl-CoA acetyltransferase, mitochondrial OS=Mus... [more]
THIL_DANRE4.421e-2146.02Acetyl-CoA acetyltransferase, mitochondrial OS=Dan... [more]
THIL_XENTR1.286e-2047.79Acetyl-CoA acetyltransferase, mitochondrial OS=Xen... [more]
THILA_XENLA1.680e-2046.90Acetyl-CoA acetyltransferase A, mitochondrial OS=X... [more]
THILB_XENLA2.865e-2055.56Acetyl-CoA acetyltransferase B, mitochondrial OS=X... [more]
THIC_MOUSE1.857e-1952.13Acetyl-CoA acetyltransferase, cytosolic OS=Mus mus... [more]
THIC_HUMAN7.058e-1951.06Acetyl-CoA acetyltransferase, cytosolic OS=Homo sa... [more]
THIC_RAT9.218e-1952.22Acetyl-CoA acetyltransferase, cytosolic OS=Rattus ... [more]
THIK_HUMAN4.575e-1851.613-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835871 ID=CF835871; Name=CF835871; organism=Citrus sinensis; type=EST; length=560bp
GAGAGAGAAGGCATTTAAGCTGGGTTTGCAAGTGATCGCCAAGATCACAG
GACTATGCTGATGCTGCTCAGGCACCAGAGATGTTTACAACAGCTCCAGC
CCTAGCCATACCTAAAGCCATTTCAAATGCTGGCTTGGAGGCTTCTCAAG
TTGACTGTTACGAAATAAATGAGGCCTTTGCTGTCGTCGCCCTTGCAAAC
CAGAAATTGCTTGGACTAAATCCTGACAAGGTTAATGTCCATGGTGGAGC
AGTAGCTTTGGGACATCCTCTGGGCTGCAGCGGAGCTCGTATCTTGGTCA
CACTTTTGGGGGTACTTAGGCAGAAAAACTGGAAATACGGTGTTGGTGGC
GTTTGCAACGGAGGAGGAGGTGCATCGGCACTTGTTGTAGAGCTTGTGTA
AGCATTTTCTGTTCGGATTATTATCAACGAGGTTGCACCCTTCTTGTGGA
GGATAATTATGGCCCATTTGGGTGGGGTGTTGTGCAATTGTATCTCCATT
TCTTTTTCATATGTGCTTTCATCTTCAATAAAAAGATAATAATTAAAAAA
AAAAAAAAAA
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