CF835871

Overview
NameCF835871
Unique NameCF835871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_SHEAM (3-ketoacyl-CoA thiolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.377e-14
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 3
Query:   96 PALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 329
            P  A  KA++ AGL    +D  E+NEAFA  +L   K LGL     DKVN++GGA+ALGHPLGCSGARI  TL+ ++  K+
Sbjct:  284 PVPATQKALARAGLSIQDMDVIELNEAFAAQSLPCVKDLGLMDVVEDKVNLNGGAIALGHPLGCSGARISTTLINLMEHKD 364          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIK_ENCCU (3-ketoacyl-CoA thiolase, peroxisomal OS=Encephalitozoon cuniculi GN=FOX3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 3
Query:   51 DYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            D+      P      P +AI K +   GLE  Q+  +EINEAFA   L   + L +  D+VN +GG++ALGHP+G SGARI+ TLL V++ +
Sbjct:  264 DFIAVGLKPRDMGLGPVVAIEKLLKRNGLEKDQISYFEINEAFASQVLCCLRKLQIGEDRVNRYGGSIALGHPIGASGARIVCTLLSVMKNE 355          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_ENTCL (3-ketoacyl-CoA thiolase OS=Enterobacter cloacae GN=fadA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLN---PDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            P +    P  A   A+  AGL AS +D +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TL+ ++  K+ ++
Sbjct:  277 PSIMGYGPVPASKLALKKAGLTASDIDLFEMNEAFAAQILPCIKDLGLMGQIDEKINLNGGAIALGHPLGCSGARISTTLINLMEGKDAQF 367          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THLA_STAES (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2384 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.350e-14
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   72 APEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLL 308
            AP +    P  AI KA+  +    + VD +E+NEAFA  ++A  + L L  DKVNV+GGA+ALGHP+G SGAR LV+LL
Sbjct:  285 APSIMGIGPVEAIHKALKRSNKVINDVDIFELNEAFAAQSIAVNRELQLPQDKVNVNGGAIALGHPIGASGARTLVSLL 363          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THLA_STAEQ (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0032 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.350e-14
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   72 APEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLL 308
            AP +    P  AI KA+  +    + VD +E+NEAFA  ++A  + L L  DKVNV+GGA+ALGHP+G SGAR LV+LL
Sbjct:  285 APSIMGIGPVEAIHKALKRSNKVINDVDIFELNEAFAAQSIAVNRELQLPQDKVNVNGGAIALGHPIGASGARTLVSLL 363          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_SHIFL (3-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fadA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.350e-14
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            P +    P  A   A+  AGL AS +  +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TLL ++ +K+ ++
Sbjct:  277 PSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERKDVQF 367          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_SHIF8 (3-ketoacyl-CoA thiolase OS=Shigella flexneri serotype 5b (strain 8401) GN=fadA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.350e-14
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            P +    P  A   A+  AGL AS +  +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TLL ++ +K+ ++
Sbjct:  277 PSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERKDVQF 367          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_SHIBS (3-ketoacyl-CoA thiolase OS=Shigella boydii serotype 4 (strain Sb227) GN=fadA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.350e-14
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            P +    P  A   A+  AGL AS +  +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TLL ++ +K+ ++
Sbjct:  277 PSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERKDVQF 367          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_SHESW (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain W3-18-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.350e-14
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 3
Query:   96 PALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 329
            P  A  KA++ AG+  + +D  E+NEAFA  +L   K LGL     DK+N++GGA+ALGHPLGCSGARI  TL+ ++  K+
Sbjct:  284 PVPATQKALARAGITVADLDVIELNEAFAAQSLPCVKDLGLADVVDDKINLNGGAIALGHPLGCSGARISTTLINLMEDKD 364          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_SHEPC (3-ketoacyl-CoA thiolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.350e-14
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 3
Query:   96 PALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 329
            P  A  KA++ AG+  + +D  E+NEAFA  +L   K LGL     DK+N++GGA+ALGHPLGCSGARI  TL+ ++  K+
Sbjct:  284 PVPATQKALARAGITVADLDVIELNEAFAAQSLPCVKDLGLADVVDDKINLNGGAIALGHPLGCSGARISTTLINLMEDKD 364          
The following BLAST results are available for this feature:
BLAST of CF835871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
FADA_SHEAM1.377e-1451.853-ketoacyl-CoA thiolase OS=Shewanella amazonensis ... [more]
THIK_ENCCU1.799e-1442.393-ketoacyl-CoA thiolase, peroxisomal OS=Encephalit... [more]
FADA_ENTCL1.799e-1446.153-ketoacyl-CoA thiolase OS=Enterobacter cloacae GN... [more]
THLA_STAES2.350e-1450.63Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAEQ2.350e-1450.63Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
FADA_SHIFL2.350e-1446.153-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fa... [more]
FADA_SHIF82.350e-1446.153-ketoacyl-CoA thiolase OS=Shigella flexneri serot... [more]
FADA_SHIBS2.350e-1446.153-ketoacyl-CoA thiolase OS=Shigella boydii serotyp... [more]
FADA_SHESW2.350e-1449.383-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHEPC2.350e-1449.383-ketoacyl-CoA thiolase OS=Shewanella putrefaciens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835871 ID=CF835871; Name=CF835871; organism=Citrus sinensis; type=EST; length=560bp
GAGAGAGAAGGCATTTAAGCTGGGTTTGCAAGTGATCGCCAAGATCACAG
GACTATGCTGATGCTGCTCAGGCACCAGAGATGTTTACAACAGCTCCAGC
CCTAGCCATACCTAAAGCCATTTCAAATGCTGGCTTGGAGGCTTCTCAAG
TTGACTGTTACGAAATAAATGAGGCCTTTGCTGTCGTCGCCCTTGCAAAC
CAGAAATTGCTTGGACTAAATCCTGACAAGGTTAATGTCCATGGTGGAGC
AGTAGCTTTGGGACATCCTCTGGGCTGCAGCGGAGCTCGTATCTTGGTCA
CACTTTTGGGGGTACTTAGGCAGAAAAACTGGAAATACGGTGTTGGTGGC
GTTTGCAACGGAGGAGGAGGTGCATCGGCACTTGTTGTAGAGCTTGTGTA
AGCATTTTCTGTTCGGATTATTATCAACGAGGTTGCACCCTTCTTGTGGA
GGATAATTATGGCCCATTTGGGTGGGGTGTTGTGCAATTGTATCTCCATT
TCTTTTTCATATGTGCTTTCATCTTCAATAAAAAGATAATAATTAAAAAA
AAAAAAAAAA
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