CF835871

Overview
NameCF835871
Unique NameCF835871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            P +    P  A   A+  AGL  + +  +E+NEAFA   L   K LGL     +KVN++GGA+ALGHPLGCSGARI  TL+ ++  ++ ++
Sbjct:  277 PSIMGYGPVPATKLALKRAGLSLADIGIFELNEAFAAQTLPCIKDLGLLEQLDEKVNLNGGAIALGHPLGCSGARISTTLINLMESRDAQF 367          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_PHOPR (3-ketoacyl-CoA thiolase OS=Photobacterium profundum GN=fadA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = 3
Query:   42 RSQDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            R +  A A   P +    P  A  KA+  AGL    +   E+NEAFA  +L   K LGL     +KVN++GGA+ALGHPLGCSG+RI  TL+  +   + ++
Sbjct:  266 RVKSMAVAGCDPSIMGYGPVPATQKALKRAGLSIDDIGMVELNEAFAAQSLPCAKDLGLLDKIDEKVNLNGGAIALGHPLGCSGSRISTTLINQMEHHDVQF 367          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_PSEA6 (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 3
Query:   96 PALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLG---LNPDKVNVHGGAVALGHPLGCSGARILVTLLGVL 317
            P  A  KA+  AG+  + ++  E NEAFA  AL+  K LG      DKVN++GGA+ALGHPLGCSG+RI  TL+ ++
Sbjct:  283 PVPATQKALKRAGMTMADIELAEFNEAFAAQALSCIKQLGWLDTYEDKVNLNGGAIALGHPLGCSGSRISTTLINLM 359          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLX (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli GN=paaJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 3
Query:   57 ADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDK--VNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            A A   P +    P  A  + +  AGL    +D  E+NEAFA  AL   + LGL  D   VN +GGA+ALGHPLG SGAR+ +     L ++N +Y             A+++E V
Sbjct:  286 ATAGVEPRLMGLGPVPATRRVLERAGLSIHDMDVIELNEAFAAQALGVLRELGLPDDAPHVNPNGGAIALGHPLGMSGARLALAASHELHRRNGRYALCTMCIGVGQGIAMILERV 401          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLI (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (strain K12) GN=paaJ PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 3
Query:   57 ADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDK--VNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            A A   P +    P  A  + +  AGL    +D  E+NEAFA  AL   + LGL  D   VN +GGA+ALGHPLG SGAR+ +     L ++N +Y             A+++E V
Sbjct:  286 ATAGVEPRLMGLGPVPATRRVLERAGLSIHDMDVIELNEAFAAQALGVLRELGLPDDAPHVNPNGGAIALGHPLGMSGARLALAASHELHRRNGRYALCTMCIGVGQGIAMILERV 401          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_COLP3 (3-ketoacyl-CoA thiolase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=fadA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP--DKVNVHGGAVALGHPLGCSGARILVTLLGVL 317
            P      P  A  KA+  AGL  + ++ +E NEAFA  AL+  + L +    D++N++GGA+ALGHPLGCSG+RI  TL+ ++
Sbjct:  277 PATMGFGPVPATKKALKRAGLSIADIELFEFNEAFAAQALSCVRSLKVEDKMDQINLNGGAIALGHPLGCSGSRISGTLINLM 359          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: PCAF_PSESB (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (strain B13) GN=pcaF PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12
Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 3
Query:   57 ADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPD--KVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            A A  AP +    P  A+ K +    L  +  D  E+NEAFA   LA  + LG+  D  +VN +GGA+ALGHPLG SGAR+++T +  L +   +              AL VE V
Sbjct:  286 ASAGVAPRVMGIGPVPAVRKLLERLNLSVADFDVIELNEAFAAQGLAVTRELGIADDDARVNPNGGAIALGHPLGASGARLVLTAVHQLEKSGGQRGLCTMCVGVGQGVALAVERV 401          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: PCAF_PSEPU (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida GN=pcaF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.425e-11
Identity = 43/116 (37.07%), Postives = 58/116 (50.00%), Query Frame = 3
Query:   57 ADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPD--KVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            A    AP +    P  A+ K     G+  S  D  E+NEAFA   LA  + LG+  D  +VN +GGA+ALGHPLG SGAR+++T L  L +   +              AL +E V
Sbjct:  285 ASGGVAPRVMGIGPVPAVRKLTERLGVAVSDFDVIELNEAFASQGLAVLRELGVADDAPQVNPNGGAIALGHPLGMSGARLVLTALHQLEKSGGRKGLATMCVGVGQGLALAIERV 400          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: PCAF_PSEAE (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aeruginosa GN=pcaF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.425e-11
Identity = 44/116 (37.93%), Postives = 58/116 (50.00%), Query Frame = 3
Query:   57 ADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPD--KVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            A A  AP +    P  A+ K +    L     D  E+NEAFA   LA  + LG+  D  KVN +GGA+ALGHPLG SGAR+++T L  L +   +              AL +E V
Sbjct:  286 ASAGVAPRIMGIGPVPAVRKLLRRLDLAIDAFDVIELNEAFASQGLACLRELGVADDSEKVNPNGGAIALGHPLGMSGARLVLTALHQLEKSGGRRGLATMCVGVGQGLALAIERV 401          
The following BLAST results are available for this feature:
BLAST of CF835871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
FADA_ERWCT4.431e-1342.863-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]
FADA_PHOPR5.787e-1341.183-ketoacyl-CoA thiolase OS=Photobacterium profundu... [more]
FADA_PSEA69.871e-1349.353-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlan... [more]
PAAJ_ECOLX2.199e-1237.07Beta-ketoadipyl-CoA thiolase OS=Escherichia coli G... [more]
PAAJ_ECOLI2.199e-1237.07Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (... [more]
FADA_COLP32.872e-1243.373-ketoacyl-CoA thiolase OS=Colwellia psychrerythra... [more]
PCAF_PSESB3.751e-1237.07Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (s... [more]
PCAF_PSEPU1.425e-1137.07Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida... [more]
PCAF_PSEAE1.425e-1137.93Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aerugi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835871 ID=CF835871; Name=CF835871; organism=Citrus sinensis; type=EST; length=560bp
GAGAGAGAAGGCATTTAAGCTGGGTTTGCAAGTGATCGCCAAGATCACAG
GACTATGCTGATGCTGCTCAGGCACCAGAGATGTTTACAACAGCTCCAGC
CCTAGCCATACCTAAAGCCATTTCAAATGCTGGCTTGGAGGCTTCTCAAG
TTGACTGTTACGAAATAAATGAGGCCTTTGCTGTCGTCGCCCTTGCAAAC
CAGAAATTGCTTGGACTAAATCCTGACAAGGTTAATGTCCATGGTGGAGC
AGTAGCTTTGGGACATCCTCTGGGCTGCAGCGGAGCTCGTATCTTGGTCA
CACTTTTGGGGGTACTTAGGCAGAAAAACTGGAAATACGGTGTTGGTGGC
GTTTGCAACGGAGGAGGAGGTGCATCGGCACTTGTTGTAGAGCTTGTGTA
AGCATTTTCTGTTCGGATTATTATCAACGAGGTTGCACCCTTCTTGTGGA
GGATAATTATGGCCCATTTGGGTGGGGTGTTGTGCAATTGTATCTCCATT
TCTTTTTCATATGTGCTTTCATCTTCAATAAAAAGATAATAATTAAAAAA
AAAAAAAAAA
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