CF835871

Overview
NameCF835871
Unique NameCF835871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:10..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIKB_RAT (3-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus norvegicus GN=Acaa1b PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.575e-18
Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 3
Query:   48 QDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            + YA     P++    PA AIP A+  AGL  + +D +EINEAFA  AL   + LG+  +KVN  GGA+ALGHPLGC+GAR +VTLL  L+++
Sbjct:  305 RSYAVVGVPPDIMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQALYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRR 397          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.575e-18
Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 3
Query:   48 QDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            + YA     P++    PA AIP A+  AGL  + +D +EINEAFA  AL   + LG+  +KVN  GGA+ALGHPLGC+GAR +VTLL  L+++
Sbjct:  305 RSYAVVGVPPDIMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQALYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRR 397          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_MACFA (Acetyl-CoA acetyltransferase, mitochondrial OS=Macaca fascicularis GN=ACAT1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.019e-17
Identity = 47/113 (41.59%), Postives = 71/113 (62.83%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVE 392
            +ADAA  P  F  AP  A+   + + GL+   +  +E+NEAF++V LAN K+L ++P KVN++GGAV+LGHP+G SGARI+  L   L+Q   +Y           ASA++++
Sbjct:  315 FADAAVEPIDFPIAPVHAVSMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ--GEYGLASICNGGGGASAMLIQ 425          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.019e-17
Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = 3
Query:   48 QDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            + YA     P++    PA AIP A+  AGL  + +D +EINEAFA  A+   + LG+  +KVN  GGA+ALGHPLGC+GAR +VTLL  L+++
Sbjct:  305 RSYAVVGVPPDVMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQAVYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRR 397          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.019e-17
Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = 3
Query:   48 QDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            + YA     P++    PA AIP A+  AGL  + +D +EINEAFA  A+   + LG+  +KVN  GGA+ALGHPLGC+GAR +VTLL  L+++
Sbjct:  305 RSYAVVGVPPDVMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQAVYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRR 397          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_HUMAN (Acetyl-CoA acetyltransferase, mitochondrial OS=Homo sapiens GN=ACAT1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.738e-17
Identity = 47/113 (41.59%), Postives = 70/113 (61.95%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVE 392
            +ADAA  P  F  AP  A    + + GL+   +  +E+NEAF++V LAN K+L ++P KVN++GGAV+LGHP+G SGARI+  L   L+Q   +Y           ASA++++
Sbjct:  315 FADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ--GEYGLASICNGGGGASAMLIQ 425          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: ATOB_ECOLI (Acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=atoB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.738e-17
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 3
Query:   42 RSQDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 329
            R + YA     P +    P  A  KA+  AGL+ + +D  E NEAFA   LA  K LG + +KVNV+GGA+ALGHP+G SGARILVTLL  ++ ++
Sbjct:  275 RIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKNLGFDSEKVNVNGGAIALGHPIGASGARILVTLLHAMQARD 370          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.965e-17
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            +A     P +    PA+AIP A+  AGLE   +D +EINEAFA   +  +  LGL+P+K+NV+GGA+A+GHPLG +GAR + TLL  ++++
Sbjct:  323 FAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGARCVATLLHEMKRR 413          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIK_YEAST (3-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomyces cerevisiae GN=FOX3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.873e-17
Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   51 DYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            D+      PE+    PA AIPK +   GL+   +D +EINEAFA  AL     LG++ +KVN  GGA+ALGHPLGC+GAR + T+L  L++
Sbjct:  304 DFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELKK 394          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_CHRVO (Acetyl-CoA acetyltransferase OS=Chromobacterium violaceum GN=phaA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.628e-17
Identity = 50/113 (44.25%), Postives = 61/113 (53.98%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVE 392
            YA     PE+    P  A  KA+S AG     +D  E NEAFA  AL   K LG   DKVNV+GGA+ALGHP+G SG R+LVTLL  ++++  K              AL VE
Sbjct:  278 YALTGCEPEIMGIGPVSATRKALSKAGWTVEDLDLVEANEAFAAQALGVAKELGWGSDKVNVNGGAIALGHPIGASGCRVLVTLLHEMQRRGAKKGLATLCIGGGMGVALAVE 390          
The following BLAST results are available for this feature:
BLAST of CF835871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
THIKB_RAT4.575e-1849.463-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus n... [more]
THIKA_RAT4.575e-1849.463-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
THIL_MACFA1.019e-1741.59Acetyl-CoA acetyltransferase, mitochondrial OS=Mac... [more]
THIKB_MOUSE1.019e-1748.393-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]
THIKA_MOUSE1.019e-1748.393-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]
THIL_HUMAN1.738e-1741.59Acetyl-CoA acetyltransferase, mitochondrial OS=Hom... [more]
ATOB_ECOLI1.738e-1747.92Acetyl-CoA acetyltransferase OS=Escherichia coli (... [more]
THIK2_ARATH2.965e-1746.153-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
THIK_YEAST3.873e-1747.253-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomy... [more]
THIL_CHRVO8.628e-1744.25Acetyl-CoA acetyltransferase OS=Chromobacterium vi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835871 ID=CF835871; Name=CF835871; organism=Citrus sinensis; type=EST; length=560bp
GAGAGAGAAGGCATTTAAGCTGGGTTTGCAAGTGATCGCCAAGATCACAG
GACTATGCTGATGCTGCTCAGGCACCAGAGATGTTTACAACAGCTCCAGC
CCTAGCCATACCTAAAGCCATTTCAAATGCTGGCTTGGAGGCTTCTCAAG
TTGACTGTTACGAAATAAATGAGGCCTTTGCTGTCGTCGCCCTTGCAAAC
CAGAAATTGCTTGGACTAAATCCTGACAAGGTTAATGTCCATGGTGGAGC
AGTAGCTTTGGGACATCCTCTGGGCTGCAGCGGAGCTCGTATCTTGGTCA
CACTTTTGGGGGTACTTAGGCAGAAAAACTGGAAATACGGTGTTGGTGGC
GTTTGCAACGGAGGAGGAGGTGCATCGGCACTTGTTGTAGAGCTTGTGTA
AGCATTTTCTGTTCGGATTATTATCAACGAGGTTGCACCCTTCTTGTGGA
GGATAATTATGGCCCATTTGGGTGGGGTGTTGTGCAATTGTATCTCCATT
TCTTTTTCATATGTGCTTTCATCTTCAATAAAAAGATAATAATTAAAAAA
AAAAAAAAAA
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