CF835871

Overview
NameCF835871
Unique NameCF835871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.628e-17
Identity = 41/84 (48.81%), Postives = 60/84 (71.43%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            P +    PA+AIP A+  AGLE + VD +EINEAFA   +  +  LGL+ +K+NV+GGA+A+GHPLG +GAR + TLL  ++++
Sbjct:  322 PAIMGVGPAVAIPAAVKAAGLELNDVDLFEINEAFASQFVYCRNKLGLDAEKINVNGGAIAIGHPLGATGARCVATLLHEMKRR 405          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_MARAV (3-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.628e-17
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFA---VVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWK 335
            P +    P  A  KA+  AGL+   +D +E+NEAFA   +  L + KLLG+  +KVN++GGA+ALGHPLGCSGARI  TLL +++ K  K
Sbjct:  281 PAIMGYGPVPATKKALKRAGLKVEDIDFWELNEAFAGQSLPVLKDLKLLGVMEEKVNLNGGAIALGHPLGCSGARISTTLLNIMQAKGGK 370          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_BACSU (3-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fadA PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.127e-16
Identity = 42/116 (36.21%), Postives = 71/116 (61.21%), Query Frame = 3
Query:   48 QDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVEL 395
            + +A     PE+    P  AIP+A+  AGL+   +  +E+NEAFA  A+   + LG++ +KVNV+GGA+ALGHPLGC+G ++ ++L+  ++++N ++            +A V EL
Sbjct:  275 RSFAVGGVPPEVMGIGPVEAIPRALKLAGLQLQDIGLFELNEAFASQAIQVIRELGIDEEKVNVNGGAIALGHPLGCTGTKLTLSLIHEMKRRNEQFGVVTMCIGGGMGAAGVFEL 390          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THL_BACSU (Acetyl-CoA acetyltransferase OS=Bacillus subtilis GN=mmgA PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 40/78 (51.28%), Postives = 57/78 (73.08%), Query Frame = 3
Query:   93 APALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            AP  AI K +   GL    +D +E+NEAFA V L  +K++G + +KVNV+GGA+ALGHP+G SGARIL+TL+  L+++
Sbjct:  292 APGFAINKLLKKNGLTVQDIDLFEVNEAFASVVLTCEKIVGFDLEKVNVNGGAIALGHPIGASGARILMTLVYELKRR 369          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THLA_STAAW (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain MW2) GN=MW0330 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            P +   AP  A+ KA+  +  E S +D +E+NEAFA  +LA  + L L P+KVNV GGA+ALGHP+G SGAR+LVTLL  L  +
Sbjct:  286 PSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQSLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDE 369          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THLA_STAAS (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0330 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            P +   AP  A+ KA+  +  E S +D +E+NEAFA  +LA  + L L P+KVNV GGA+ALGHP+G SGAR+LVTLL  L  +
Sbjct:  286 PSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQSLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDE 369          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THLA_STAAC (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain COL) GN=SACOL0426 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            P +   AP  A+ KA+  +  E S +D +E+NEAFA  +LA  + L L P+KVNV GGA+ALGHP+G SGAR+LVTLL  L  +
Sbjct:  286 PSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQSLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDE 369          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THLA_STAAB (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0304 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            P +   AP  A+ KA+  +  E S +D +E+NEAFA  +LA  + L L P+KVNV GGA+ALGHP+G SGAR+LVTLL  L  +
Sbjct:  286 PSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQSLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDE 369          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THLA_STAA8 (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00336 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            P +   AP  A+ KA+  +  E S +D +E+NEAFA  +LA  + L L P+KVNV GGA+ALGHP+G SGAR+LVTLL  L  +
Sbjct:  286 PSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQSLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDE 369          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THLA_STAA3 (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0355 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            P +   AP  A+ KA+  +  E S +D +E+NEAFA  +LA  + L L P+KVNV GGA+ALGHP+G SGAR+LVTLL  L  +
Sbjct:  286 PSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQSLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDE 369          
The following BLAST results are available for this feature:
BLAST of CF835871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
THIK1_ARATH8.628e-1748.813-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
FADA_MARAV8.628e-1748.893-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei ... [more]
FADA_BACSU1.127e-1636.213-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fa... [more]
THL_BACSU1.472e-1651.28Acetyl-CoA acetyltransferase OS=Bacillus subtilis ... [more]
THLA_STAAW1.472e-1651.19Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAS1.472e-1651.19Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAC1.472e-1651.19Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAB1.472e-1651.19Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAA81.472e-1651.19Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAA31.472e-1651.19Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835871 ID=CF835871; Name=CF835871; organism=Citrus sinensis; type=EST; length=560bp
GAGAGAGAAGGCATTTAAGCTGGGTTTGCAAGTGATCGCCAAGATCACAG
GACTATGCTGATGCTGCTCAGGCACCAGAGATGTTTACAACAGCTCCAGC
CCTAGCCATACCTAAAGCCATTTCAAATGCTGGCTTGGAGGCTTCTCAAG
TTGACTGTTACGAAATAAATGAGGCCTTTGCTGTCGTCGCCCTTGCAAAC
CAGAAATTGCTTGGACTAAATCCTGACAAGGTTAATGTCCATGGTGGAGC
AGTAGCTTTGGGACATCCTCTGGGCTGCAGCGGAGCTCGTATCTTGGTCA
CACTTTTGGGGGTACTTAGGCAGAAAAACTGGAAATACGGTGTTGGTGGC
GTTTGCAACGGAGGAGGAGGTGCATCGGCACTTGTTGTAGAGCTTGTGTA
AGCATTTTCTGTTCGGATTATTATCAACGAGGTTGCACCCTTCTTGTGGA
GGATAATTATGGCCCATTTGGGTGGGGTGTTGTGCAATTGTATCTCCATT
TCTTTTTCATATGTGCTTTCATCTTCAATAAAAAGATAATAATTAAAAAA
AAAAAAAAAA
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