CF835871

Overview
NameCF835871
Unique NameCF835871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:10..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THLA_STAAR (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0351 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            P +   AP  A+ KA+  +  E S +D +E+NEAFA  +LA  + L L P+KVNV GGA+ALGHP+G SGAR+LVTLL  L  +
Sbjct:  286 PAIMGIAPVDAVEKALKRSKKELSDIDVFELNEAFAAQSLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDE 369          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THLA_STAAN (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain N315) GN=SA0342 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            P +   AP  A+ KA+  +  E S +D +E+NEAFA   LA  + L L P+KVNV GGA+ALGHP+G SGAR+LVTLL  L  +
Sbjct:  286 PSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQLLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDE 369          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THLA_STAAM (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0354 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQK 326
            P +   AP  A+ KA+  +  E S +D +E+NEAFA   LA  + L L P+KVNV GGA+ALGHP+G SGAR+LVTLL  L  +
Sbjct:  286 PSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQLLAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDE 369          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 50/110 (45.45%), Postives = 62/110 (56.36%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPD--KVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            P +   APA AI K +  A L   Q+D  E+NEAFA  ALA  + LGL  D  +VN +GGA+ALGHPLG SGAR++ T L  L Q   KY             AL++E V
Sbjct:  292 PRIMGFAPAPAIKKLLKQANLTLDQMDVIELNEAFAAQALACTRDLGLADDDARVNPNGGAIALGHPLGASGARLVTTALNQLEQSGGKYALCSMCIGVGQGIALIIERV 401          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: CATF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=catF PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 50/110 (45.45%), Postives = 62/110 (56.36%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPD--KVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            P +   APA AI K +  A L   Q+D  E+NEAFA  ALA  + LGL  D  +VN +GGA+ALGHPLG SGAR++ T L  L Q   KY             AL++E V
Sbjct:  292 PRIMGFAPAPAIKKLLKQANLTLDQMDVIELNEAFAAQALACTRDLGLADDDARVNPNGGAIALGHPLGASGARLVTTALNQLEQSGGKYALCSMCIGVGQGIALIIERV 401          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: ATOB_HAEIN (Acetyl-CoA acetyltransferase OS=Haemophilus influenzae GN=atoB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 47/115 (40.87%), Postives = 62/115 (53.91%), Query Frame = 3
Query:   48 QDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVE 392
            + YA     P +    P  A  KA+  AG+    +D  E NEAFA   L   K L L+ +K N+HGGA+ALGHP+G SGARILVTLL  L +K+ K              +++VE
Sbjct:  277 RSYASGGVDPSVMGLGPVPATQKALKKAGINLDDIDLIEANEAFASQFLGVGKDLNLDMNKTNIHGGAIALGHPIGASGARILVTLLHNLIEKDKKLGLATLCIGGGQGISMIVE 391          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_RALEH (Acetyl-CoA acetyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=phbA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.282e-16
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 3
Query:   48 QDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVE 392
            + YA+A   P++    P  A  +A+S A      +D  EINEAFA  ALA  + +G +  KVNV+GGA+A+GHP+G SG RILVTLL  +++++ K              AL VE
Sbjct:  277 KSYANAGVDPKVMGMGPVPASKRALSRAEWTPQDLDLMEINEAFAAQALAVHQQMGWDTSKVNVNGGAIAIGHPIGASGCRILVTLLHEMKRRDAKKGLASLCIGGGMGVALAVE 391          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_VIBPA (3-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus GN=fadA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.476e-16
Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   42 RSQDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            R +  A A   P +    P  A  KA+  AGL    +D  E+NEAFA  +L   K LGL     +KVN++GGA+ALGHPLGCSGARI  TL+ ++  K+ KY
Sbjct:  270 RIKGMAIAGCDPSIMGYGPVPATQKALKRAGLAIEDMDVVELNEAFAAQSLPCAKDLGLLEVMDEKVNLNGGAIALGHPLGCSGARISTTLINLMEAKDAKY 371          

HSP 2 Score: 21.557 bits (44), Expect = 5.476e-16
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 2
Query:    5 EKAFKLGLQVIAKITGL 55
            EKA +LGL++ A+I G+
Sbjct:  258 EKANELGLKIRARIKGM 274          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_MYCLE (Probable acetyl-CoA acetyltransferase OS=Mycobacterium leprae GN=fadA4 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.592e-16
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 3
Query:   96 PALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            PA AI KA+   G+   Q+D  EINEAFA VALA+ + LG+ P+ VNV+GGA+A+GHPLG SGARI + +   L ++   Y             AL++  V
Sbjct:  293 PANAIKKAVDREGISVEQLDVVEINEAFAAVALASARELGIAPELVNVNGGAIAVGHPLGMSGARITLHVALELARRGSGYGVAALCGAGGQGDALILRAV 393          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_PSESM (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. tomato GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.592e-16
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 3
Query:   57 ADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            A A   P +    P  A  KA+  AGL  S +D +E+NEAFA  AL    + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  275 AVAGVDPAIMGYGPVPATQKALKRAGLSISDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
The following BLAST results are available for this feature:
BLAST of CF835871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
THLA_STAAR1.922e-1651.19Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAN2.510e-1651.19Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAM2.510e-1651.19Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
PCAF_ACIAD2.510e-1645.45Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
CATF_ACIAD2.510e-1645.45Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
ATOB_HAEIN3.278e-1640.87Acetyl-CoA acetyltransferase OS=Haemophilus influe... [more]
THIL_RALEH4.282e-1640.87Acetyl-CoA acetyltransferase OS=Ralstonia eutropha... [more]
FADA_VIBPA5.476e-1646.083-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus... [more]
THIL_MYCLE5.592e-1644.55Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
FADA_PSESM5.592e-1650.003-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835871 ID=CF835871; Name=CF835871; organism=Citrus sinensis; type=EST; length=560bp
GAGAGAGAAGGCATTTAAGCTGGGTTTGCAAGTGATCGCCAAGATCACAG
GACTATGCTGATGCTGCTCAGGCACCAGAGATGTTTACAACAGCTCCAGC
CCTAGCCATACCTAAAGCCATTTCAAATGCTGGCTTGGAGGCTTCTCAAG
TTGACTGTTACGAAATAAATGAGGCCTTTGCTGTCGTCGCCCTTGCAAAC
CAGAAATTGCTTGGACTAAATCCTGACAAGGTTAATGTCCATGGTGGAGC
AGTAGCTTTGGGACATCCTCTGGGCTGCAGCGGAGCTCGTATCTTGGTCA
CACTTTTGGGGGTACTTAGGCAGAAAAACTGGAAATACGGTGTTGGTGGC
GTTTGCAACGGAGGAGGAGGTGCATCGGCACTTGTTGTAGAGCTTGTGTA
AGCATTTTCTGTTCGGATTATTATCAACGAGGTTGCACCCTTCTTGTGGA
GGATAATTATGGCCCATTTGGGTGGGGTGTTGTGCAATTGTATCTCCATT
TCTTTTTCATATGTGCTTTCATCTTCAATAAAAAGATAATAATTAAAAAA
AAAAAAAAAA
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