CF835871

Overview
NameCF835871
Unique NameCF835871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:10..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_MYCBO (Probable acetyl-CoA acetyltransferase OS=Mycobacterium bovis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.125e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   96 PALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARI 293
            PA AI KA+   G+   Q+D  EINEAFA VALA+ + LGLNP  VNV+GGA+A+GHPLG SG RI
Sbjct:  289 PANAINKALDREGISVDQLDVVEINEAFAAVALASIRELGLNPQIVNVNGGAIAVGHPLGMSGTRI 354          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIK_YARLI (3-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia lipolytica GN=POT1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.125e-15
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWK 335
            PE+    PA AIP  + + GL  + VD +EINEAFA  AL + +  G++  KVN  GGA+A+GHPLG +GAR   TLL  L++   K
Sbjct:  307 PELMGIGPAYAIPAVLEDLGLTVNDVDVFEINEAFASQALFSIQHCGIDESKVNPRGGAIAIGHPLGATGARQFATLLSELKESGKK 393          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_VIBCH (3-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.125e-15
Identity = 47/102 (46.08%), Postives = 60/102 (58.82%), Query Frame = 3
Query:   42 RSQDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            R +  A A   P +    P  A  KA+  AGL    +D  E+NEAFA  +L   K LGL     DKVN++GGA+ALGHPLGCSG RI  TL+ ++  K+ KY
Sbjct:  266 RIKAMAVAGCDPSIMGYGPVPATHKALQRAGLTMQDMDVVELNEAFAAQSLPCAKDLGLLEMMDDKVNLNGGAIALGHPLGCSGTRISTTLINLMEAKDAKY 367          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_VIBC3 (3-ketoacyl-CoA thiolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.125e-15
Identity = 47/102 (46.08%), Postives = 60/102 (58.82%), Query Frame = 3
Query:   42 RSQDYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            R +  A A   P +    P  A  KA+  AGL    +D  E+NEAFA  +L   K LGL     DKVN++GGA+ALGHPLGCSG RI  TL+ ++  K+ KY
Sbjct:  266 RIKAMAVAGCDPSIMGYGPVPATHKALKRAGLTMQDMDVVELNEAFAAQSLPCAKDLGLLDMMDDKVNLNGGAIALGHPLGCSGTRISTTLINLMEAKDAKY 367          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.125e-15
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 3
Query:   57 ADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            A A   P +    P  A  KA+  AGL  + +D +E+NEAFA  AL    + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  275 AVAGVDPAIMGYGPVPATQKALKRAGLGINDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_PSEF5 (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.125e-15
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 3
Query:   57 ADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            A A   P +    P  A  KA+  AGL  + +D +E+NEAFA  AL    + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  275 AVAGVDPAIMGYGPVPATQKALKRAGLGINDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_YERPS (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-15
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  277 PSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_YERPP (3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain Pestoides F) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-15
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  277 PSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_YERPN (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-15
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  277 PSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_YERPE (3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-15
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  277 PSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
The following BLAST results are available for this feature:
BLAST of CF835871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
THIL_MYCBO2.125e-1562.12Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
THIK_YARLI2.125e-1547.133-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia l... [more]
FADA_VIBCH2.125e-1546.083-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA... [more]
FADA_VIBC32.125e-1546.083-ketoacyl-CoA thiolase OS=Vibrio cholerae serotyp... [more]
FADA_PSEPF2.125e-1548.913-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_PSEF52.125e-1548.913-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_YERPS2.775e-1547.253-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_YERPP2.775e-1547.253-ketoacyl-CoA thiolase OS=Yersinia pestis (strain... [more]
FADA_YERPN2.775e-1547.253-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERPE2.775e-1547.253-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835871 ID=CF835871; Name=CF835871; organism=Citrus sinensis; type=EST; length=560bp
GAGAGAGAAGGCATTTAAGCTGGGTTTGCAAGTGATCGCCAAGATCACAG
GACTATGCTGATGCTGCTCAGGCACCAGAGATGTTTACAACAGCTCCAGC
CCTAGCCATACCTAAAGCCATTTCAAATGCTGGCTTGGAGGCTTCTCAAG
TTGACTGTTACGAAATAAATGAGGCCTTTGCTGTCGTCGCCCTTGCAAAC
CAGAAATTGCTTGGACTAAATCCTGACAAGGTTAATGTCCATGGTGGAGC
AGTAGCTTTGGGACATCCTCTGGGCTGCAGCGGAGCTCGTATCTTGGTCA
CACTTTTGGGGGTACTTAGGCAGAAAAACTGGAAATACGGTGTTGGTGGC
GTTTGCAACGGAGGAGGAGGTGCATCGGCACTTGTTGTAGAGCTTGTGTA
AGCATTTTCTGTTCGGATTATTATCAACGAGGTTGCACCCTTCTTGTGGA
GGATAATTATGGCCCATTTGGGTGGGGTGTTGTGCAATTGTATCTCCATT
TCTTTTTCATATGTGCTTTCATCTTCAATAAAAAGATAATAATTAAAAAA
AAAAAAAAAA
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