CF835871

Overview
NameCF835871
Unique NameCF835871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:10..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_YERPA (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-15
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  277 PSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-15
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +++ ++
Sbjct:  277 PSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERRDVQF 367          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.775e-15
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 3
Query:   96 PALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKN 329
            P  A  KA+  AGL    +D +E+NEAFA  +L   K LGL     +KVN++GGA+ALGHPLGCSGARI  TLL ++ +K+
Sbjct:  284 PVPATQKALKRAGLTIGDIDLFELNEAFAAQSLPCVKDLGLQDVVDEKVNLNGGAIALGHPLGCSGARISTTLLNLMEEKD 364          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_PSEMY (3-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (strain ymp) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.625e-15
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 3
Query:   57 ADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            A A   P +    P  +  KA+  AGL  + +D  E+NEAFA  AL    + KLL    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  275 AVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFVELNEAFAAQALPVLKDLKLLDKMEEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_PSEFR (3-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fadA PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.625e-15
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 3
Query:   57 ADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            A A   P +    P  A  KA+  AGL  + +D  E+NEAFA  AL    + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  275 AVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIM_RAT (3-ketoacyl-CoA thiolase, mitochondrial OS=Rattus norvegicus GN=Acaa2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.734e-15
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKY 338
            P +    P  AI  A+  AGL    +D  ++NEAFA   LA QK L L+P K NV GGA+ALGHPLG SG+RI   L+  LR++  KY
Sbjct:  289 PAIMGIGPVPAITGALKKAGLSLKDMDLIDVNEAFAPQFLAVQKSLDLDPSKTNVSGGAIALGHPLGGSGSRITAHLVHELRRRGGKY 376          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIM_MOUSE (3-ketoacyl-CoA thiolase, mitochondrial OS=Mus musculus GN=Acaa2 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.734e-15
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 3
Query:   75 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVE 392
            P +    P  AI  A+  AGL    +D  ++NEAFA   L+ QK L L+P K NV GGA+ALGHPLG SG+RI   L+  LR++  KY             AL+++
Sbjct:  289 PTIMGIGPVPAINGALKKAGLSLKDMDLIDVNEAFAPQFLSVQKALDLDPSKTNVSGGAIALGHPLGGSGSRITAHLVHELRRRGGKYAVGSACIGGGQGIALIIQ 394          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_PSEAE (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa GN=fadA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.734e-15
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 3
Query:   57 ADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            A A   P +    P  +  KA+  AGL  + +D  E+NEAFA  AL    + KLL    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  275 AVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAAQALPVLKDLKLLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_PSEAB (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.734e-15
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 3
Query:   57 ADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            A A   P +    P  +  KA+  AGL  + +D  E+NEAFA  AL    + KLL    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  275 AVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAAQALPVLKDLKLLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: FADA_PSEA7 (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain PA7) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.734e-15
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 3
Query:   57 ADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            A A   P +    P  +  KA+  AGL  + +D  E+NEAFA  AL    + KLL    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  275 AVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAAQALPVLKDLKLLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
The following BLAST results are available for this feature:
BLAST of CF835871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
FADA_YERPA2.775e-1547.253-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERP32.775e-1547.253-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_AERHH2.775e-1551.853-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
FADA_PSEMY3.625e-1548.913-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (... [more]
FADA_PSEFR3.625e-1548.913-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fa... [more]
THIM_RAT4.734e-1548.863-ketoacyl-CoA thiolase, mitochondrial OS=Rattus n... [more]
THIM_MOUSE4.734e-1541.513-ketoacyl-CoA thiolase, mitochondrial OS=Mus musc... [more]
FADA_PSEAE4.734e-1548.913-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEAB4.734e-1548.913-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEA74.734e-1548.913-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835871 ID=CF835871; Name=CF835871; organism=Citrus sinensis; type=EST; length=560bp
GAGAGAGAAGGCATTTAAGCTGGGTTTGCAAGTGATCGCCAAGATCACAG
GACTATGCTGATGCTGCTCAGGCACCAGAGATGTTTACAACAGCTCCAGC
CCTAGCCATACCTAAAGCCATTTCAAATGCTGGCTTGGAGGCTTCTCAAG
TTGACTGTTACGAAATAAATGAGGCCTTTGCTGTCGTCGCCCTTGCAAAC
CAGAAATTGCTTGGACTAAATCCTGACAAGGTTAATGTCCATGGTGGAGC
AGTAGCTTTGGGACATCCTCTGGGCTGCAGCGGAGCTCGTATCTTGGTCA
CACTTTTGGGGGTACTTAGGCAGAAAAACTGGAAATACGGTGTTGGTGGC
GTTTGCAACGGAGGAGGAGGTGCATCGGCACTTGTTGTAGAGCTTGTGTA
AGCATTTTCTGTTCGGATTATTATCAACGAGGTTGCACCCTTCTTGTGGA
GGATAATTATGGCCCATTTGGGTGGGGTGTTGTGCAATTGTATCTCCATT
TCTTTTTCATATGTGCTTTCATCTTCAATAAAAAGATAATAATTAAAAAA
AAAAAAAAAA
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