CF835876

Overview
NameCF835876
Unique NameCF835876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835876 vs. ExPASy Swiss-Prot
Match: NACB_DEBHA (Nascent polypeptide-associated complex subunit beta OS=Debaryomyces hansenii GN=EGD1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.934e-14
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = -3
Query:  375 PSSKMNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELV 821
            P     + KL K + A + GG     R K   +  T  DD +L   L ++    I  IEE N FK+D  V+ F    VQ +   NT+ ++G PQ K +  ++P I+ QLG +NL+ LRKLAEQ Q  + P    G     E+D   +P+L+
Sbjct:    2 PVDPEKLAKLQKASVAKKVGGS----RVKAKKNVKTEQDDTKLIEALGKLKAQKIEGIEEANFFKEDGKVLHFNRVGVQGAAQHNTFALTGYPQEKDVTQLIPQILPQLGAENLEILRKLAEQIQAGKNPELNAGGAEGAEED---IPDLI 145          
BLAST of CF835876 vs. ExPASy Swiss-Prot
Match: NACB_CANAL (Nascent polypeptide-associated complex subunit beta OS=Candida albicans GN=EGD1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 52/148 (35.14%), Postives = 80/148 (54.05%), Query Frame = -3
Query:  375 EKLMKM--AGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ--KQAPNAGTGAPTTQED-DDDEVPELV 800
            EKL K+  + A + GG     R K   +  T  DD +L   L ++    I  +EE N F++D  V+ F    VQ + A+NT+  +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  K   +  TG+     D   +++P+LV
Sbjct:    6 EKLAKLQKSSAKKVGGS----RVKAKKNIKTEQDDTKLIEALGKLKATKIEGVEEANFFREDGKVLHFNRVGVQGAPASNTFAFTGYPQEKNITQLIPQILPQLGAENLEILRQLAEQIQAGKTPKDFNTGSANAAADAGGEDIPDLV 149          
BLAST of CF835876 vs. ExPASy Swiss-Prot
Match: NACB_PICGU (Nascent polypeptide-associated complex subunit beta OS=Pichia guilliermondii GN=EGD1 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12
Identity = 49/145 (33.79%), Postives = 77/145 (53.10%), Query Frame = -3
Query:  375 EKLMKMA-GAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELV 800
            EKL K+  GA +  G   V+ KK    +    DD +L   L ++    + A+EE N FK+D  V+ F    VQ++   N    +G PQ K +  ++P I+ QLG +NL+ LR+LAEQ Q  + P+ G          D+++P+L+
Sbjct:    6 EKLAKLQQGAAKKVGGQRVKAKKVKSEQ----DDTKLMEALGKLKATKVNAVEEANFFKEDGKVLHFKRVGVQSAAQHNVCAFTGYPQEKDVTQLIPQILPQLGAENLEILRQLAEQIQAGKTPSMG----GENAGADEDIPDLI 142          
The following BLAST results are available for this feature:
BLAST of CF835876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NACB_DEBHA2.934e-1435.10Nascent polypeptide-associated complex subunit bet... [more]
NACB_CANAL1.456e-1335.14Nascent polypeptide-associated complex subunit bet... [more]
NACB_PICGU3.587e-1233.79Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835876 ID=CF835876; Name=CF835876; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTTTTACAGGCAAAATATTTAGCCGCCTGCCCCTAAAA
AGAGCAACCGATCCGACGACATCAGACTTACCCCCTTATGCACAATAGAA
AGCCATTGCAACAGTGCCTCCAGATTCTGAAAGAGTAAAAAGGTTTTCAC
TGGTTTCACTGGAGCAAAACATTGAATTAAAAGTAACAATATCTAGTGTC
ACAGGGAGAATCAGATAAAACAAGAGAAAGTTGACTCGGAAAAGTAAAAT
AAAAGCTCAAAAAACATAGAAAATATATAGAATAACACAAAGTCCCTCTA
GATAAAACTCTCTAAGAAGCAGCGTCAGGTTTCTCTGTTTTCTCCTCTGC
GGCAGCTTCAAACGTCTCGCCTGCCACAAGCTCTGGGACCTCATCGTCGT
CGTCCTCTTGAGTCGTGGGTGCACCAGTTCCTGCATTAGGTGCTTGCTTC
TGAAACTGCTCCGCCAACTTCCTCAGGTTGTCCAAATTATCTGGCCCCAA
TTGATTGATAATTCCAGGGAGAATATCCTGCAACTTCTTGGTTTGTGGGG
CACCACTAACTACCCATGTGTTGGCAGCAATTGAAGCTTGTACTTTGGGA
TTTAAGAACTGAATAACGACGTCATCCTTGAAAATGTTAACTTCCTCAAT
TGCAGGAATAGCATTCACTCCTATTCTCTTCAAGGTGCTCTGAAGCCTCT
TGTCATCGGTGGTTGTTGTCTTATGAACAGCCTTCTTCTTTCTTCTCACA
CTACCCTTACCACCGGTGCGAACTGCACCGGCCATCTTCATTAGCTTCTC
AACATTCATCTTGGAGCTAGGGTTTTTGTGTGGGGACAAAGAATTTGGTG
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