CF835881

Overview
NameCF835881
Unique NameCF835881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835881_ssr313 microsatellite CF835881_ssr313:313..324. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835881_ssr332 microsatellite CF835881_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1628 contig Csv1_Contig1628:36..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1D_RABIT (Elongation factor 1-delta OS=Oryctolagus cuniculus GN=EEF1D PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.018e-19
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 3 
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLT 653
            +LLDVKPWDDETDM +LE  VRSV++ GL WGASKLVPVGYGI+K+QI   + DD V  D L+EE +T
Sbjct:  197 ILLDVKPWDDETDMARLEACVRSVQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT 263
[Close]
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1D_RAT (Elongation factor 1-delta OS=Rattus norvegicus GN=Eef1d PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 3 
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLT 653
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+K+QI   + DD V  D L+EE +T
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT 264
[Close]
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1D_MOUSE (Elongation factor 1-delta OS=Mus musculus GN=Eef1d PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 3 
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLT 653
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+K+QI   + DD V  D L+EE +T
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT 264
[Close]
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1D_MACFA (Elongation factor 1-delta OS=Macaca fascicularis GN=EEF1D PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 3 
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLT 653
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+K+QI   + DD V  D L+EE +T
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT 264
[Close]
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1D_HUMAN (Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 3 
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLT 653
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+K+QI   + DD V  D L+EE +T
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT 264
[Close]
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1D_BOVIN (Elongation factor 1-delta OS=Bos taurus GN=EEF1D PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.169e-18
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 3 
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEE 644
            +LLDVKPWDDETDM +LE  VRSV++ GL WG+SKLVPVGYGI+K+QI   + DD V  D L EE
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVVEDDKVGTDQLEEE 261
[Close]
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1B2_CAEEL (Probable elongation factor 1-beta/1-delta 2 OS=Caenorhabditis elegans GN=Y41E3.10 PE=1 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 42/65 (64.62%), Postives = 54/65 (83.08%), Query Frame = 3 
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEE 644
            V+LDVKPWDDETD+ ++E+ VRS+EM GL WG +KL+P+GYGIKK+QI+  I D  VSVD LIE+
Sbjct:  179 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK 243
[Close]
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1B1_CAEEL (Probable elongation factor 1-beta/1-delta 1 OS=Caenorhabditis elegans GN=F54H12.6 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 42/65 (64.62%), Postives = 54/65 (83.08%), Query Frame = 3 
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEE 644
            V+LDVKPWDDETD+ ++E+ VRS+EM GL WG +KL+P+GYGIKK+QI+  I D  VSVD LIE+
Sbjct:  129 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK 193
[Close]
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1D_ARTSA (Elongation factor 1-delta OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.994e-18
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 3 
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEE 644
            +LLD+KPWDDETDM  +E  VRS+ M GL WGASKLVPV +G+KK+QI   + DD VSVD L+E+
Sbjct:  154 ILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQISCVVEDDKVSVDELVEK 218
[Close]
BLAST of CF835881 vs. ExPASy Swiss-Prot
Match: EF1B_ARTSA (Elongation factor 1-beta OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 3 
Query:  450 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEE 644
            V+LD+KPWDDETDM ++E+ VRSV+M GL WGA+KL+P+ YGIKK+ IM  + DD VS+D L E+
Sbjct:  124 VILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVEDDKVSIDELQEK 188
The following BLAST results are available for this feature:
BLAST of CF835881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1D_RABIT4.018e-1966.18Elongation factor 1-delta OS=Oryctolagus cuniculus... [more]
EF1D_RAT6.854e-1964.71Elongation factor 1-delta OS=Rattus norvegicus GN=... [more]
EF1D_MOUSE6.854e-1964.71Elongation factor 1-delta OS=Mus musculus GN=Eef1d... [more]
EF1D_MACFA6.854e-1964.71Elongation factor 1-delta OS=Macaca fascicularis G... [more]
EF1D_HUMAN6.854e-1964.71Elongation factor 1-delta OS=Homo sapiens GN=EEF1D... [more]
EF1D_BOVIN1.169e-1866.15Elongation factor 1-delta OS=Bos taurus GN=EEF1D P... [more]
EF1B2_CAEEL1.527e-1864.62Probable elongation factor 1-beta/1-delta 2 OS=Cae... [more]
EF1B1_CAEEL1.527e-1864.62Probable elongation factor 1-beta/1-delta 1 OS=Cae... [more]
EF1D_ARTSA1.994e-1863.08Elongation factor 1-delta OS=Artemia salina PE=1 S... [more]
EF1B_ARTSA3.401e-1861.54Elongation factor 1-beta OS=Artemia salina PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835881 ID=CF835881; Name=CF835881; organism=Citrus sinensis; type=EST; length=729bp
GTTGTGCGCATCTTCTTGCCTCTGCCTTGAAGACTAAAATGGCCATCACC
TTTTCAGATCTCCACACAGAGTCAGGCCTTAAGTCTCTTGATCAGTATCT
TTCTGGGAAATCTTATATCTCCGGTAATCAACTGACAAAAGATGACATCA
AGGTCTACGCTGCCGTTTTGGTGAAACCTGCTGATTCTTTCCCCAACGCC
AGCAGGTGGTACGACAGCGTTTCTTCACATATCGCCCCAAGCTTCCCTGG
CAAAGCCGTTGGTGTGAGAGTTGATGGCAAAGGTGCTCCAGTTGACGCCG
CCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGTGATGATGATGATTTGGAT
CTCTTCGGAGATGAGACTGAGGAGGATAAGAAAGCAGCAGAGGAGAGGGA
GGCTGCTAAAAAGCAATCATCCAAGAAGAAAGAGAGTGGAAAATCATCGG
TACTTTTGGATGTAAAGCCTTGGGATGACGAGACAGACATGAAAAAGCTA
GAAGAGGCAGTTAGGAGTGTTGAGATGCCGGGTCTCTTTTGGGGAGCATC
AAAATTGGTCCCAGTCGGTTATGGGATTAAGAAGATGCAGATCATGATGA
CAATCATTGATGATCTTGTTTCTGTGGATTCACTCATAGAGGAACACCTC
ACAGTTGAGCCCTGCAATGAAACAAAGCAGGGTAATTTGTATCATAACTC
TTGGATCAGAACCAGAATTTCCCGTGATT
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