CF835891

Overview
NameCF835891
Unique NameCF835891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 1.515e-61
Identity = 107/161 (66.46%), Postives = 132/161 (81.99%), Query Frame = -2 
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            T E+FRL+YDTKGRF +H +  EEAK+KLCKVR    G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   95 TGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 7.521e-61
Identity = 107/161 (66.46%), Postives = 131/161 (81.37%), Query Frame = -2 
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            T E+FRL+YDTKGRF +H +  EEAK+KLCKVR    G K IP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   95 TGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 233.417 bits (594), Expect = 9.822e-61
Identity = 102/161 (63.35%), Postives = 133/161 (82.61%), Query Frame = -2 
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            T ENFRL+YD KGRF +H + +EEAK+KLCKV+ +  G KGIP++ T+D RTIRYPDP+IKANDT+++DLE  KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++D+ G+ FATRL N+F IGKG+K WVS+P+GKGI+L+I EE  KR
Sbjct:   95 TGENFRLIYDVKGRFTVHRITNEEAKYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 233.417 bits (594), Expect = 9.822e-61
Identity = 105/161 (65.22%), Postives = 132/161 (81.99%), Query Frame = -2 
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            T E+FRL+YDTKGRF +H +  EEAK+KLCKVR +    KGIP++ T+D RTIRYPDPLIK NDT++++LE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   95 TGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.419e-59
Identity = 104/161 (64.60%), Postives = 131/161 (81.37%), Query Frame = -2 
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            T E FRL+YD KGRF +H +  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+   KITD+IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FATRL NVF IGKG+KP++SLPKGKG+KLSI EE  KR
Sbjct:   95 TGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255
[Close]
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 4.127e-59
Identity = 101/161 (62.73%), Postives = 129/161 (80.12%), Query Frame = -2 
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            T E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KIT FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   95 TGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.039e-59
Identity = 109/161 (67.70%), Postives = 127/161 (78.88%), Query Frame = -2 
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            T E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:   95 TGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRR 255
[Close]
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.201e-58
Identity = 109/161 (67.70%), Postives = 127/161 (78.88%), Query Frame = -2 
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            T E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:   95 TGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255
[Close]
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.201e-58
Identity = 109/161 (67.70%), Postives = 127/161 (78.88%), Query Frame = -2 
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            T E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:   95 TGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255
[Close]
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.493e-58
Identity = 104/161 (64.60%), Postives = 130/161 (80.75%), Query Frame = -2 
Query:  260 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 742
            T E FRL+YD KGRF +H + +EEAK+KLCKVR VQ G KG+P++ T+DGRT+RYPDP+IK NDTI+L++  NKI D IKFD GN+ M+TGGRN GRVG + +RE+H GSF+  HI+D+ GH FATR+ NVF IGKGSK +VSLP+GKG+KLSI EE  KR
Sbjct:   95 TGEFFRLIYDVKGRFSIHRISNEEAKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRNLGRVGTVVSRERHPGSFDICHIKDSQGHTFATRMNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255
The following BLAST results are available for this feature:
BLAST of CF835891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS4_XENTR1.515e-6166.4640S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4X_MONDO7.521e-6166.4640S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4_ICTPU9.822e-6163.3540S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4Y1_MONDO9.822e-6165.2240S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4_DROME2.419e-5964.6040S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y1_MACFU4.127e-5962.7340S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4B_SCHPO7.039e-5967.7040S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4C_SCHPO1.201e-5867.7040S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4A_SCHPO1.201e-5867.7040S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4_LYSTE3.493e-5864.6040S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B04_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835891 ID=CF835891; Name=CF835891; organism=Citrus sinensis; type=EST; length=743bp
TTTTTTTTTTTTTTTTAAGAGATACATGAACTTAGATTAAATAGCTCCAT
AATAACATCCACCAAATAGTAGCTAAAATAAAAAAGGACAAAGCAGGTTC
AAAATTGTGCTGATAAAATAAAAATAAAGATTCATTTTTGCATCCGTCCT
ACTTCAGCTTTAGAGAGTGCCAATCAGCTCTAATTCAACAAGAAAAAACA
AAGCAGCAAAATGTATCCAAATTCATTGTAAAAGCTTAAGCAGCAGCCTG
GGCAGCCTGTCTCTTCCTAGCTTCCTCAATGATGGACAACTTAATACCCT
TGCCCTTAGGAAGTGACACCCATGGTTTTGAACCCTTCCCGATGGTGAAC
ACATTGCCTAGACGAGTTGCAAACTCATGACCAAGGGCATCTTGAATATG
GATGGTCTCAAAACTTCCCTTATGCTTTTCCCTGTTCTTGATGATTCCAA
CCCGACCTCTGTTTCTACCCCCAGTGACCATGACAATATTCCCAACATCA
AACTTGATGAAGTCAGTGATCTTGTTCTCTTCTAAGTCAAGTTTGATGGT
ATCATTGGCTTTGATGAGTGGGTCAGGGTAGCGGATGGTACGCCCATCAT
AGGTGTTGATGTATGGGATACCTTTCTGGCCAAACTGGACTGATCTAACT
TTGCAAAGCTTGAATTTTGCCTCCTCATCTCTGAGGGAATGGAGACGGAA
GCGACCCTTGGTGTCATAAAGGAGACGGAAGTTCTCGTTGGTC
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