CF835891

Overview
NameCF835891
Unique NameCF835891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 55/156 (35.26%), Postives = 84/156 (53.85%), Query Frame = -2
Query:  302 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 742
            T E FR+L      F+LH + +EE   K  ++ +    + G   +N +DGR I  R  DP      + +  DT+ + +   +I   IKF  G I ++ GGRN GRVG++K+ +K  G   T + ++DA G+ F T L  VF IG   +P +SLP+G
Sbjct:   96 TGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVISLPEG 250          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 52/157 (33.12%), Postives = 81/157 (51.59%), Query Frame = -2
Query:  302 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGSKPWVSLPKG 742
            T E +R+L      F LH +  EEA+FKL ++      + G   ++ +DGR   IR  DP         K   T+K+ + E ++  +   +VG++V++ GGRN GRVG I + +        + I+DA G +  T L  VF I     +PW+SLP+G
Sbjct:   96 TGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAPPNEEPWISLPEG 252          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 52/159 (32.70%), Postives = 85/159 (53.46%), Query Frame = -2
Query:  302 TNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG----IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 742
            T E +R++        L  +  EEAK+KL ++ +    + G   +N +DGR   I+  DP      + K   T+++ + E +I ++I  D G +V+++GGRN GRVG    I K   +H+     + I+D  G++F T L  VF IGK  +P + LP+G
Sbjct:   96 TGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKVVSIHKGIRRHR---SIVTIEDKHGNKFQTSLTYVFPIGK-EEPLIKLPEG 250          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13
Identity = 52/155 (33.55%), Postives = 80/155 (51.61%), Query Frame = -2
Query:  302 NENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLIKANDT------IKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETI-HIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 739
            N+ +R++        L  +  EEA FKLC++ +    + G   +N +DGR   IR  DP     DT      +KL +   +I D++    G I +V+GGRN GRVG I +  K    + +I  ++D  G++F T L  +F IG   KP + LP+G
Sbjct:   97 NKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIGV-EKPLIKLPEG 250          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 46/143 (32.17%), Postives = 73/143 (51.05%), Query Frame = -2
Query:  311 NENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 739
            N+ FR+L D KGR  L  + ++++ FKL K+      + G   +N   GR I   D   K  D + L++ E KI+D IKF+ G + ++TGG++   VG I   +  + S     + +     F T    VF +G+  KP +SL
Sbjct:   97 NKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNIIADDDY-KTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVGKIDEIKITQSSKSNTVLMETEEGSFLTLARYVFVVGQ-DKPVISL 237          
BLAST of CF835891 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 43/142 (30.28%), Postives = 74/142 (52.11%), Query Frame = -2
Query:  338 NENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG 739
            NEN+R+L+D KGR +L    + + K  LCK+++    + G   +N +DGR I  +  DP      + K  DT+ + + E +I   I F+VG +  +TGG++ G    I   E+     + + +++  G +F T    VF +G
Sbjct:   97 NENYRVLFDRKGRIKLKPTENPDVK--LCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIERRGIYPDIVTLENMDGEKFKTVKDYVFVVG 236          
The following BLAST results are available for this feature:
BLAST of CF835891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS4E_AERPE1.642e-1535.2630S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_HYPBU1.390e-1433.1230S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_STAMF2.621e-1332.7030S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_DESK14.471e-1333.5530S ribosomal protein S4e OS=Desulfurococcus kamch... [more]
RS4E_METST1.438e-1132.1730S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_METJA1.878e-1130.2830S ribosomal protein S4e OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B04_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835891 ID=CF835891; Name=CF835891; organism=Citrus sinensis; type=EST; length=743bp
TTTTTTTTTTTTTTTTAAGAGATACATGAACTTAGATTAAATAGCTCCAT
AATAACATCCACCAAATAGTAGCTAAAATAAAAAAGGACAAAGCAGGTTC
AAAATTGTGCTGATAAAATAAAAATAAAGATTCATTTTTGCATCCGTCCT
ACTTCAGCTTTAGAGAGTGCCAATCAGCTCTAATTCAACAAGAAAAAACA
AAGCAGCAAAATGTATCCAAATTCATTGTAAAAGCTTAAGCAGCAGCCTG
GGCAGCCTGTCTCTTCCTAGCTTCCTCAATGATGGACAACTTAATACCCT
TGCCCTTAGGAAGTGACACCCATGGTTTTGAACCCTTCCCGATGGTGAAC
ACATTGCCTAGACGAGTTGCAAACTCATGACCAAGGGCATCTTGAATATG
GATGGTCTCAAAACTTCCCTTATGCTTTTCCCTGTTCTTGATGATTCCAA
CCCGACCTCTGTTTCTACCCCCAGTGACCATGACAATATTCCCAACATCA
AACTTGATGAAGTCAGTGATCTTGTTCTCTTCTAAGTCAAGTTTGATGGT
ATCATTGGCTTTGATGAGTGGGTCAGGGTAGCGGATGGTACGCCCATCAT
AGGTGTTGATGTATGGGATACCTTTCTGGCCAAACTGGACTGATCTAACT
TTGCAAAGCTTGAATTTTGCCTCCTCATCTCTGAGGGAATGGAGACGGAA
GCGACCCTTGGTGTCATAAAGGAGACGGAAGTTCTCGTTGGTC
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