CF835892

Overview
NameCF835892
Unique NameCF835892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.270e-18
Identity = 57/201 (28.36%), Postives = 99/201 (49.25%), Query Frame = 3
Query:   57 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPD-PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS 656
            +  H KRL  PK W +++   A+  K ++GPH   E +PL++VLR+ L Y  + +E    L Q  +L++G   +D+  P G  D+++  +  E +R+  D  GR  L  + ++ A  KL K+        G   ++ +DG T+   D      ND+I +  +  +I     ++ G +V    G + GR+G I   +   GS
Sbjct:    1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPH-GEEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALVTAVSGAHAGRIGTIDEIQVTPGS 200          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.828e-18
Identity = 56/201 (27.86%), Postives = 100/201 (49.75%), Query Frame = 3
Query:   57 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS 656
            +  H KRL+ P  W +++    F  K  +GPH     +PL++VLR+ L YA   +E    L + +VL++GK  +D+  P G  D+++  +  E +R+     GR  L ++  + A+ KL K+ +      G   +  +DG T I   D    A D+I +  E+ ++    +++ G +V    G + G VG ++  +   GS
Sbjct:    1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEVEEIQVTPGS 200          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.828e-18
Identity = 56/201 (27.86%), Postives = 98/201 (48.76%), Query Frame = 3
Query:   57 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS 656
            + +H KRL  P  W +++    F  K  +GPH     +PL+++LR+ L Y  + +E    L    VLV+G   +D+  P G  D+++ P+  E FR+  D  GR  L S+ +E A  +L K+ +      G   +  +DG  +    D      D+I +D E   +    +++ G +V    G++ GR+G + + +   GS
Sbjct:    1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIGEVADIDVTLGS 200          
The following BLAST results are available for this feature:
BLAST of CF835892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_NATPD1.270e-1828.3630S ribosomal protein S4e OS=Natronomonas pharaoni... [more]
RS4E_HALMA2.828e-1827.8630S ribosomal protein S4E OS=Haloarcula marismortu... [more]
RS4E_HALLT2.828e-1827.8630S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02B04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835892 ID=CF835892; Name=CF835892; organism=Citrus sinensis; type=EST; length=763bp
CAGACAAGCCGCTGCAGCGAGGCAGCAGCTTCAAACTCACAAAAATGGCT
CCAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGCACTGGAT
GCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCATCTGGTCCCC
ACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGAAACCGTTTG
AAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGATGCAACGACA
TGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACCCTGCTGGTT
TCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTCCGTCTCCTT
TATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATGAGGAGGC
AAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCCAGAAAGGTA
TCCCATACATCAACACCTATGATGGGCGTACCATCCGCTACCCTGACCCA
CTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAAGAGAACAAGAT
CACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGGTCACTGGGG
GTAGAAACAGAGGTCGGGTTGGAATCATCAAGAACAGGGAAAAGCATAAG
GGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTGGTCATGAGTTTGC
AACTCGTCTAGGCAATGTGTTCACCATCGGGAAGGGTTCAAAACCATGGG
TGTCACTTCCTAA
back to top