CF835892

Overview
NameCF835892
Unique NameCF835892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 341.273 bits (874), Expect = 3.496e-93
Identity = 160/239 (66.95%), Postives = 195/239 (81.59%), Query Frame = 3
Query:   45 MAPGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 761
            MA G KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VDGKVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H +  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+   KITD+IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FATRL NVF IGKG+KP++SLP
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLP 239          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.959e-92
Identity = 162/239 (67.78%), Postives = 193/239 (80.75%), Query Frame = 3
Query:   45 MAPGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 761
            MA G KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL  REV AILMQR V VDGKVRTD T+PAGFMDV+ + KT ENFRL+YD KGRF +H + DEEA +KL KV+ VQ G+KGIPY+ T+DGRTIRYPDPLIK NDT+K+DL   KIT F+KF+ GNIVM TGGRN GRVG I +RE+H+G F+ +HI+DAL ++F TRL NVF IG+G+K  +SLP
Sbjct:    1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLISLP 239          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 335.88 bits (860), Expect = 1.469e-91
Identity = 163/239 (68.20%), Postives = 188/239 (78.66%), Query Frame = 3
Query:   45 MAPGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 761
            MA G KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLILVLRNRLKYALT +EV  ILMQR V VDGKVRTD  YPAGFMDV+SI KT ENFRLL+D KGRF L  +  EEAKFKL +V  V+ G +GIPY++T DGRTIRYPDP I  +DTIK+D+E  KIT FI F+V N+ M+ GG N GRVG + +REKH GSF+ +H+ D  GH+FATRL NVF IGK S+ +VSLP
Sbjct:    1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLP 239          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 332.798 bits (852), Expect = 1.243e-90
Identity = 156/239 (65.27%), Postives = 189/239 (79.08%), Query Frame = 3
Query:   45 MAPGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 761
            MA G KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQ  + +DGKVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL   KIT FIKFD GN+ MV  G N GRVG+I NRE+H GS + +H++DA G+ FATR+ N+F IG G+KPW+SLP
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLP 239          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.743e-87
Identity = 156/240 (65.00%), Postives = 187/240 (77.92%), Query Frame = 3
Query:   45 MAPGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGSKPWVSLP 761
            M  G KKHLKRL AP HWML KL G +AP+PS+GPH  RE LPL + LRNRL YAL  REV AI+MQ+HV V GKVRTD TYPAGFMDV+++  TNE+FRL YD KG+F +H +  EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL   KI  FIKFD G +VMVTGGRN GRVG+I +REK +G F+ +HI+DAL + F TRL NVF IG +  KPWVSLP
Sbjct:    1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGRNLGRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWVSLP 240          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 8.077e-82
Identity = 150/236 (63.56%), Postives = 178/236 (75.42%), Query Frame = 3
Query:   54 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 761
            G KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E   IL QR V VDGKVRT   +P GFMDVV+I +TNE FR+LYDTKGR+ +H ++  EA FKLCKV+SV+   KG+P + T DGRTIRYPDP +K NDTI  ++   KITD +KF+ GN+  VTGGRN GRVGII +RE+  G+ + IHI+D+ GH FATR+ NVF IGKG+K  VSLP
Sbjct:    3 GPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLP 238          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.207e-77
Identity = 136/194 (70.10%), Postives = 160/194 (82.47%), Query Frame = 3
Query:  102 LDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA 683
            LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.527e-72
Identity = 137/240 (57.08%), Postives = 173/240 (72.08%), Query Frame = 3
Query:   48 APGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQR--HVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 761
            A G KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL  R+V  IL  +  +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L SL  EEAK+KL KV +   G   IPYI T+D RTIR+P+P IK  DT+K DL  NKI +F   + GN+  +  G N GRVGII++ EKH+GSF+  H++DA G+ FATRLGN+F +G+G K ++ LP
Sbjct:    1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKLYIELP 240          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.469e-46
Identity = 98/240 (40.83%), Postives = 148/240 (61.67%), Query Frame = 3
Query:   45 MAPGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKP-WVSLP 761
            M  G + HLKR  APK WMLDK GG FA  P+SGPHK  EC+PL  ++   L+YA  ++E+  IL ++++ V+G+VRT+  +P G  DVVSI KT E+FR+LY+   +F LH +  EEA ++L KV + ++  +GIPYI +  G +IR+ DP I    TIK+  E +K+ ++I      ++ V+ G+ RGRVG+I N    +G      + D  G+ F+    +   IG+ S+  W++LP
Sbjct:    1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV-TKKYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI-NTISTQGKETVYGMTDFAGNTFSCTSKSCILIGESSENIWITLP 238          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.595e-37
Identity = 90/246 (36.59%), Postives = 135/246 (54.88%), Query Frame = 3
Query:   54 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGSKPWVSLP 761
            G ++HLK L APK W + +  G F  KPS GPH     +PL++++R+ L YA T RE   ++ + H  +DG+VR +  YP GFMDV+ I  T E +R+L      F LH +  EEA+FKL ++      + G   ++ +DGR   IR  DP         K   T+K+ + E ++  +   +VG++V++ GGRN GRVG I + +        + I+DA G +  T L  VF I     +PW+SLP
Sbjct:    5 GGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAPPNEEPWISLP 250          
The following BLAST results are available for this feature:
BLAST of CF835892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_DROME3.496e-9366.9540S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4_YARLI2.959e-9267.7840S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_DICDI1.469e-9168.2040S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4Y2_HUMAN1.243e-9065.2740S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_CANAL3.743e-8765.0040S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_CAEEL8.077e-8263.5640S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_HORSE1.207e-7770.1040S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_TETTH1.527e-7257.0840S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_ENCCU5.469e-4640.8340S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_HYPBU1.595e-3736.5930S ribosomal protein S4e OS=Hyperthermus butylicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835892 ID=CF835892; Name=CF835892; organism=Citrus sinensis; type=EST; length=763bp
CAGACAAGCCGCTGCAGCGAGGCAGCAGCTTCAAACTCACAAAAATGGCT
CCAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGCACTGGAT
GCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCATCTGGTCCCC
ACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGAAACCGTTTG
AAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGATGCAACGACA
TGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACCCTGCTGGTT
TCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTCCGTCTCCTT
TATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATGAGGAGGC
AAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCCAGAAAGGTA
TCCCATACATCAACACCTATGATGGGCGTACCATCCGCTACCCTGACCCA
CTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAAGAGAACAAGAT
CACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGGTCACTGGGG
GTAGAAACAGAGGTCGGGTTGGAATCATCAAGAACAGGGAAAAGCATAAG
GGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTGGTCATGAGTTTGC
AACTCGTCTAGGCAATGTGTTCACCATCGGGAAGGGTTCAAAACCATGGG
TGTCACTTCCTAA
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