CF835892

Overview
NameCF835892
Unique NameCF835892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:12..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.236e-23
Identity = 63/238 (26.47%), Postives = 116/238 (48.74%), Query Frame = 3
Query:   45 MAPGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 758
            MA G+KKH KR+++       K  G F  K SSGPH   + + L+ +++     A   +E   ++    + V+GK      +P   MD +S P  N+++R+L    G+  ++ +   E   K+CKV  +         I T D R ++     IK  D++ +    ++I   +KF+VG++ ++T G++ G + +IK   K K   + IH++   G +   +  ++  IG+     +SL
Sbjct:    1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKTSILSL 238          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.110e-22
Identity = 70/230 (30.43%), Postives = 116/230 (50.43%), Query Frame = 3
Query:   66 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEE---NKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF--ETIHIQDALGHEFATRLGNVFTIGKGS 740
            HLKR+ +PK W + +    F  K S GPH ++  LP+++  R+++      +E   +L +R ++V+G+         G  D+VSIPK+ +++R+L D KGR     + ++ A  +L K+ +    + G   +N  DG  +   D   K+ D+I L L+E   N+I D   F  GN+ M+ GG++ G VG I       GS     I   ++ G  F T    V  +G+ S
Sbjct:    4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRIIEHIPVPGSLPNRVILKDESSGESFETIDEYVVMVGRES 231          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.507e-22
Identity = 73/226 (32.30%), Postives = 110/226 (48.67%), Query Frame = 3
Query:   57 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 728
            +K+HL+ L  P+ W +  K  G +  KPS GPH     +P+ + LR+ L  A   REV  +L    VLVDG+   D  +P G  DV++IP+ NE +R+L D +G+  L  +  EEA  K  K +R V      I Y  T DGRT    D   K +  +  ++   KI + I  +      +  G++ GR+G+IK   K    +  I   +  G    T L N+  +
Sbjct:    5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVIKEVIKTDMPWPNIVRLEVAGEVGETWLDNIIPV 228          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.192e-22
Identity = 68/192 (35.42%), Postives = 95/192 (49.48%), Query Frame = 3
Query:   66 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR---TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGII 629
            HL+R  AP  W +  K GG +  +PS GPH     LPL L++R+ LKYA T  E   I+ + +V VDG VR D  +P G MDV+ I  T E +R++ D    + L  +  EEA  KL +V      + G   ++ +DGR   T       IK  D++  DL    I   I   +G   +V  G N G  G +
Sbjct:    3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.733e-21
Identity = 71/231 (30.74%), Postives = 108/231 (46.75%), Query Frame = 3
Query:   72 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKG-SFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 761
            KRL   +   + +    + P P+ G H   + + L+ ++R+ LK +   RE   IL    V VDGK   +K +  GFMDV+ I    E++R++Y+ +G   L     E A  KL KVRS          + T+DGRT    D   K  D   + + + KI++ IK   GN   +T G +  + G I   E  +G S   +H Q+     F+T   +VF IG     +V  P
Sbjct:    6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEG----FSTIKDHVFMIGSSKFSFVLSP 230          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.662e-21
Identity = 70/239 (29.29%), Postives = 112/239 (46.86%), Query Frame = 3
Query:   66 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-----LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREK---HKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 758
            H+ RL AP      K    +  + S GPH   + +PL L+LR+ L +  + +E   I+    VLVDG+VR D  YP G MDV++IP  +   R++ D     +   + +EE+KFKL ++ +    + G+   N  DGR +           +    T+K+ +   +I     F     VM  GG+N G +G +K  +        +  + I+   G E+ T L N   IG+  KP V +
Sbjct:    3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIGQLKRIQTSPYKTRRYSIVVIRSPDGSEYETNLENAMVIGE-EKPEVKV 240          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.771e-20
Identity = 67/221 (30.32%), Postives = 105/221 (47.51%), Query Frame = 3
Query:   72 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNRE-KHKGSFETIHIQDALGHEFATRLGNVFTIG 731
            KRL  P+   + +    + P P  G HK+   + L+ ++R+ L+ +   RE   IL    V VDGKV  ++ +  GFMDV+ I  + E++R++Y+ +G   L S   + A  K  +V++          +  +DGR +   D  I   D +   L + KIT+ IK   GN   +TGG + G  G I   E K   S   +H  +     F T   +VF IG
Sbjct:    6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIEIKESSSANLVHFDEG----FTTVKDHVFVIG 220          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.341e-19
Identity = 65/221 (29.41%), Postives = 110/221 (49.77%), Query Frame = 3
Query:   72 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIG 731
            K + AP+   + +    +A     G HK    +PL++ LR+ LK     RE+  IL    V+VDGKV  ++    GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      IK  D++ + + + +I D +KF  GN V +TGG + G +  IK+ E    S E  +H+ +     F+T    VF +G
Sbjct:    6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG 220          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.720e-19
Identity = 59/212 (27.83%), Postives = 98/212 (46.23%), Query Frame = 3
Query:   57 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALG 689
            +  H KRL+ PK W +++    F  K  +GPH     +PL++VLR+ L+Y     E    +    VLV+G    D   P G  D+++ P  +E +R+  D  GR  L  +  + A  KL KV        G   +N +DG  +   +      D++ +D + N+I    +++ G +V    G++ G +G I       GS   T+ + D  G
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211          
BLAST of CF835892 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.720e-19
Identity = 59/212 (27.83%), Postives = 98/212 (46.23%), Query Frame = 3
Query:   57 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALG 689
            +  H KRL+ PK W +++    F  K  +GPH     +PL++VLR+ L+Y     E    +    VLV+G    D   P G  D+++ P  +E +R+  D  GR  L  +  + A  KL KV        G   +N +DG  +   +      D++ +D + N+I    +++ G +V    G++ G +G I       GS   T+ + D  G
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211          
The following BLAST results are available for this feature:
BLAST of CF835892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_BIGNA2.236e-2326.4740S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_METHJ1.110e-2230.4330S ribosomal protein S4e OS=Methanospirillum hung... [more]
RS4E_NANEQ5.507e-2232.3030S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4E_PYRAE7.192e-2235.4230S ribosomal protein S4e OS=Pyrobaculum aerophilu... [more]
RS4E_THEAC2.733e-2130.7430S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_METS54.662e-2129.2930S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4E_THEVO1.771e-2030.3230S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]
RS4E_PICTO3.341e-1929.4130S ribosomal protein S4e OS=Picrophilus torridus ... [more]
RS4E_HALSA9.720e-1927.8330S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALS39.720e-1927.8330S ribosomal protein S4e OS=Halobacterium salinar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02B04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835892 ID=CF835892; Name=CF835892; organism=Citrus sinensis; type=EST; length=763bp
CAGACAAGCCGCTGCAGCGAGGCAGCAGCTTCAAACTCACAAAAATGGCT
CCAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGCACTGGAT
GCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCATCTGGTCCCC
ACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGAAACCGTTTG
AAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGATGCAACGACA
TGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACCCTGCTGGTT
TCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTCCGTCTCCTT
TATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATGAGGAGGC
AAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCCAGAAAGGTA
TCCCATACATCAACACCTATGATGGGCGTACCATCCGCTACCCTGACCCA
CTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAAGAGAACAAGAT
CACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGGTCACTGGGG
GTAGAAACAGAGGTCGGGTTGGAATCATCAAGAACAGGGAAAAGCATAAG
GGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTGGTCATGAGTTTGC
AACTCGTCTAGGCAATGTGTTCACCATCGGGAAGGGTTCAAAACCATGGG
TGTCACTTCCTAA
back to top