CF835895

Overview
NameCF835895
Unique NameCF835895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835895 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.700e-30
Identity = 66/116 (56.90%), Postives = 84/116 (72.41%), Query Frame = -1
Query:  271 IIRKPTKIHSRSRARRMKEAKRKGRPSGYGKRKGSREARLPPKIXXXXXXXXXXXXXRKYRESKKIDKHMSHDMYMKVKGNVFKNKRVLMESIPQSKAEKAREKTLSDQFEAKRAK 618
            IIRKP  +HSR+R R+   A+RKGR  G GKRKG+  AR+P K+             R+YRESKKID+HM H +Y+KVKGNVFKNKR+LME I + KA+KAR+K L+DQ EA+R+K
Sbjct:   50 IIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF835895 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.454e-29
Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = -1
Query:  271 IIRKPTKIHSRSRARRMKEAKRKGRPSGYGKRKGSREARLPPKIXXXXXXXXXXXXXRKYRESKKIDKHMSHDMYMKVKGNVFKNKRVLMESIPQSKAEKAREKTLSDQFEAKRAK 618
            II+KP  +HSR+R R+   A+RKGR  G GKRKG+  AR+P K+             R+YRESKKID+HM H +Y++ KGNVFKNKR+LME I + KA++AR+K LSDQ EA+R+K
Sbjct:   50 IIKKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSK 165          
BLAST of CF835895 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.186e-29
Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = -1
Query:  268 FIIRKPTKIHSRSRARRMKEAKRKGRPSGYGKRKGSREARLPPKIXXXXXXXXXXXXXRKYRESKKIDKHMSHDMYMKVKGNVFKNKRVLMESIPQSKAEKAREKTLSDQFEAKRAKN 621
            FI+RKP  +HSRSRAR    AKR GR  G G R G+REARLP KI             +KYRE+KKIDKH   ++Y+K KGNVFKNKR L+E I +SK EK REK + DQ +A+R KN
Sbjct:   49 FIMRKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQARRNKN 166          
BLAST of CF835895 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.141e-29
Identity = 62/116 (53.45%), Postives = 82/116 (70.69%), Query Frame = -1
Query:  271 IIRKPTKIHSRSRARRMKEAKRKGRPSGYGKRKGSREARLPPKIXXXXXXXXXXXXXRKYRESKKIDKHMSHDMYMKVKGNVFKNKRVLMESIPQSKAEKAREKTLSDQFEAKRAK 618
            II+KP  +HSR+R R+   A+RKGR  G GKRKG+  AR+P K+             R+YRE+KKID+HM H +Y++ KGNVFKNKR+LME I + KA+KAR+K L+DQ EA+R K
Sbjct:   50 IIKKPVTVHSRARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTK 165          
BLAST of CF835895 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.140e-26
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = -1
Query:  268 IIRKPTKIHSRSRARRMKEAKRKGRPSGYGKRKGSREARLPPKIXXXXXXXXXXXXXRKYRESKKIDKHMSHDMYMKVKGNVFKNKRVLMESIPQSKAEKAREKTLSDQFEAKRAKN 618
            IIRKP  +HSR RAR  +EA+RKGR +GYGKR+G+  AR+P K              R+YR++KK+DKH+ H++Y++ KGN FKNK+ L+E I + K E  R K L+DQ +A+R KN
Sbjct:   50 IIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKN 166          
BLAST of CF835895 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 118.627 bits (296), Expect = 2.540e-26
Identity = 57/117 (48.72%), Postives = 80/117 (68.38%), Query Frame = -1
Query:  268 IIRKPTKIHSRSRARRMKEAKRKGRPSGYGKRKGSREARLPPKIXXXXXXXXXXXXXRKYRESKKIDKHMSHDMYMKVKGNVFKNKRVLMESIPQSKAEKAREKTLSDQFEAKRAKN 618
            I++K   +HS+SR R   ++KR+GR SGYGKRKG+REARLP ++              KYR++ KIDKH+ H +Y + KGN FK+KR L+E I Q+KA+  REK L+++ EA+R KN
Sbjct:   50 IVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKN 166          
BLAST of CF835895 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.667e-25
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = -1
Query:  271 IIRKPTKIHSRSRARRMKEAKRKGRPSGYGKRKGSREARLPPKIXXXXXXXXXXXXXRKYRESKKIDKHMSHDMYMKVKGNVFKNKRVLMESIPQSKAEKAREKTLSDQFEAKRAK 618
            +IRKP  +HSR R R+   AKR GR +GYGKRKG+ EAR+P  +             RKYRES KIDKH+ H +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+
Sbjct:   50 VIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165          
BLAST of CF835895 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 3.667e-25
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = -1
Query:  271 IIRKPTKIHSRSRARRMKEAKRKGRPSGYGKRKGSREARLPPKIXXXXXXXXXXXXXRKYRESKKIDKHMSHDMYMKVKGNVFKNKRVLMESIPQSKAEKAREKTLSDQFEAKRAK 618
            +IRKP  +HSR R R+   AKR GR +GYGKRKG+ EAR+P  +             RKYRES KIDKH+ H +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+
Sbjct:   50 VIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165          
The following BLAST results are available for this feature:
BLAST of CF835895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL19_XENLA1.700e-3056.9060S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_ICTPU2.454e-2954.3160S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_DICDI4.186e-2955.9360S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19_DANRE7.141e-2953.4560S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_CAEEL1.140e-2649.5760S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19_YEAST2.540e-2648.7260S ribosomal protein L19 OS=Saccharomyces cerevis... [more]
RL19B_SCHPO3.667e-2549.1460S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19A_SCHPO3.667e-2549.1460S ribosomal protein L19-A OS=Schizosaccharomyces... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02B07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835895 ID=CF835895; Name=CF835895; organism=Citrus sinensis; type=EST; length=621bp
GGGTCCACTTTAAAGGGTTTATAAGNAAATAATTTGCCATTAAACAGAAA
ACAAAATAACTTGGGAAACAAACTCCTACCCCCAAACCAGAACCAACATT
AACATATATAAGTTATCAATCTTCAGTCTCCATCATCGATGTATCAGCGA
TCACTTCTTAGCTTTCTTAGCTCCCTCAGCTGGTTGGGGGGCTGGTACTG
CCTTCTCTCCAGGTCCCTGGGGTAGTCGCTCTTCTCTCCTGGCCAGCTTT
CTCTCCCTGCTGGCCTTGTTCTTGGCGCGCTTAGCCTCAAACTGGTCAGA
AAGAGTCTTCTCTCTTGCCTTTTCAGCCTTTGACTGGGGGATACTCTCCA
TGAGGACACGCTTGTTCTTAAATACATTACCCTTGACCTTCATGTACATG
TCATGGGACATGTGCTTGTCAATTTTCTTCGACTCACGGTATTTGCGGAG
CAACCGCCTGAGCACACGCATCCTTCTCATCCAGAGGATTTTGGGGGGAA
GCCTCGCCTCCCTAGAACCCTTTCTCTTACCATATCCAGAGGGACGGCCC
TTCCTCTTGGCTTCCTTCATTCTGCGAGCGCGAGAACGGGAGTGGATCTT
TGTTGGCTTCCTGATGATGAA
back to top