CF835896

Overview
NameCF835896
Unique NameCF835896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835896 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.837e-56
Identity = 104/162 (64.20%), Postives = 127/162 (78.40%), Query Frame = 3
Query:   48 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 533
            L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:    4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF835896 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.451e-55
Identity = 102/162 (62.96%), Postives = 126/162 (77.78%), Query Frame = 3
Query:   48 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 533
            L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y++ KGNVFKNKR+LME IHK KA++AR+K LSDQ EA+R+K
Sbjct:    4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSK 165          
BLAST of CF835896 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.612e-54
Identity = 101/162 (62.35%), Postives = 125/162 (77.16%), Query Frame = 3
Query:   48 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 533
            L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRE+KKID+HMYH +Y++ KGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R K
Sbjct:    4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTK 165          
BLAST of CF835896 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.782e-53
Identity = 100/166 (60.24%), Postives = 125/166 (75.30%), Query Frame = 3
Query:   39 ILSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 536
            ++SLKLQKRL+AS+LKCG+G+VW+DPNE+ +++MANSR N+R+L+  GFI+RKP  +HSRSRAR    AKR GRH G G R GTREARLP+KI              KYRE+KKIDKH Y ++Y+K KGNVFKNKR L+E I KSK EK REK + DQ +A+R KN
Sbjct:    1 MVSLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQARRNKN 166          
BLAST of CF835896 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.412e-50
Identity = 94/164 (57.32%), Postives = 124/164 (75.61%), Query Frame = 3
Query:   45 SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 536
            +L+LQKRL+++VLKCG+ +VWLDPNEV+EIS ANSRQ+IR+LV DG IIRKP  +HSR RAR  +EA+RKGRH+GYGKR+GT  AR+P K               +YR++KK+DKH+YH++Y++ KGN FKNK+ L+E I K K E  R K L+DQ +A+R KN
Sbjct:    3 NLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKN 166          
BLAST of CF835896 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.844e-50
Identity = 95/163 (58.28%), Postives = 122/163 (74.85%), Query Frame = 3
Query:   45 SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 533
            +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQNIRKLVKDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ +              KYRES KIDKH+YH +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+
Sbjct:    3 NLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165          
BLAST of CF835896 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 3.146e-50
Identity = 93/163 (57.06%), Postives = 122/163 (74.85%), Query Frame = 3
Query:   45 SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 533
            +L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQN+RKL+KDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ +              KYRES KIDKH+YH +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+
Sbjct:    3 NLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165          
BLAST of CF835896 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 184.496 bits (467), Expect = 4.701e-46
Identity = 89/164 (54.27%), Postives = 121/164 (73.78%), Query Frame = 3
Query:   45 SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 536
            +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR R   ++KR+GRHSGYGKRKGTREARLP+++              KYR++ KIDKH+YH +Y + KGN FK+KR L+E I ++KA+  REK L+++ EA+R KN
Sbjct:    3 NLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKN 166          
BLAST of CF835896 vs. ExPASy Swiss-Prot
Match: RL19_PYRHO (50S ribosomal protein L19e OS=Pyrococcus horikoshii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27
Identity = 59/136 (43.38%), Postives = 87/136 (63.97%), Query Frame = 3
Query:   45 SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVL 452
            +LK+Q+R++A +LKCG  +VW+DP +V+E++ A +R++IR+L+K+G I +KP +  SR RAR   E K+KGRH G G RKG + AR+  K               K +E KKID+  Y  +Y++ KG  FKNK  L
Sbjct:    3 TLKMQRRIAAELLKCGENRVWIDPEKVDEVASAITREDIRRLIKEGVIRKKPIEGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRRELRKLKEQKKIDRKTYRMLYIRAKGGQFKNKHQL 138          
BLAST of CF835896 vs. ExPASy Swiss-Prot
Match: RL19_PYRAB (50S ribosomal protein L19e OS=Pyrococcus abyssi GN=rpl19e PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 59/149 (39.60%), Postives = 90/149 (60.40%), Query Frame = 3
Query:   45 SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAR 491
            +LK+Q+R++A +LKCG  ++W+DP  V++++ A +R++IR+L+K+G I +KP K  SR RAR   E K+KGRH G G RKG + AR+  K               K +E KKID+  Y  +Y++ KG  FK+K  L   + +    K R
Sbjct:    3 TLKMQRRVAAELLKCGENRIWIDPERVDDVASAITREDIRRLIKEGVIKKKPVKGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKEQKKIDRRTYRMLYIRAKGGQFKSKHQLYMFLEEHNLLKKR 151          
The following BLAST results are available for this feature:
BLAST of CF835896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL19_BOVIN3.837e-5664.2060S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]
RL19_ICTPU9.451e-5562.9660S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_DANRE1.612e-5462.3560S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_DICDI1.782e-5360.2460S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19_CAEEL1.412e-5057.3260S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19B_SCHPO1.844e-5058.2860S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19A_SCHPO3.146e-5057.0660S ribosomal protein L19-A OS=Schizosaccharomyces... [more]
RL19_YEAST4.701e-4654.2760S ribosomal protein L19 OS=Saccharomyces cerevis... [more]
RL19_PYRHO3.742e-2743.3850S ribosomal protein L19e OS=Pyrococcus horikoshi... [more]
RL19_PYRAB8.337e-2739.6050S ribosomal protein L19e OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835896 ID=CF835896; Name=CF835896; organism=Citrus sinensis; type=EST; length=700bp
CGTTGAGAGAGACAGAGGGGGAGAGAAGAGAAGGGAAAATCCTGTCGTTG
AAGTTACAGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGGCAA
GGTCTGGCTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACTCCA
GGCAGAACATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAGCCA
ACAAAGATCCACTCCCGTTCTCGCGCTCGCAGAATGAAGGAAGCCAAGAG
GAAGGGCCGTCACTCTGGATATGGTAAGAGAAAGGGTACTAGGGAGGCGA
GGCTTCCCACCAAAATCCTCTGGATGAGAAGGATGCGTGTGCTCAGGCGG
TTGCTCCGCAAATACCGTGAGTCGAAGAAAATTGACAAGCACATGTACCA
TGACATGTACATGAAGGTCAAGGGTAATGTATTTAAGAACAAGCGTGTCC
TCATGGAGAGTATCCACAAGTCAAAGGCTGAAAAGGCAAGAGAGAAGACT
CTTTCTGACCAGTTTGAGGCTAAGCGCGCCAAGAACAAGGCCAGCAGGGA
GAGAAAGCTGGCCAGGAGAGAAGAGCGACTAGCACAGGGACCTGGAGAGA
AGGCAGTACCAGCACCCCAACCAGCTGAGGGAGCTAAGAAAGCTAAGAAG
TGATCGCTGATACATCGATGATGGAGACTGAAGATTGATAACTTATATAT
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