CF835897

Overview
NameCF835897
Unique NameCF835897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5486 contig Csv1_Contig5486:196..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.718e-35
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  348 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAK 707
            KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME I K KA+KAR+K L+DQ EA+R+K
Sbjct:   46 KDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.481e-34
Identity = 70/120 (58.33%), Postives = 88/120 (73.33%), Query Frame = -1
Query:  348 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAK 707
            KDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y++ KGNVFKNKR+LME I K KA++AR+K LSDQ EA+R+K
Sbjct:   46 KDGLIIKKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSK 165          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.219e-34
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = -1
Query:  348 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAK 707
            KDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRE+KKID+HMYH +Y++ KGNVFKNKR+LME I K KA+KAR+K L+DQ EA+R K
Sbjct:   46 KDGLIIKKPVTVHSRARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTK 165          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.679e-33
Identity = 71/119 (59.66%), Postives = 83/119 (69.75%), Query Frame = -1
Query:  345 GFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAKN 701
            GFI+RKP  +HSRSRAR    AKR GRH G G R GTREARLP+KI             +KYRE+KKIDKH Y ++Y+K KGNVFKNKR L+E I KSK EK REK + DQ +A+R KN
Sbjct:   48 GFIMRKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQARRNKN 166          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.380e-31
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = -1
Query:  345 DGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAKN 704
            DG IIRKP  +HSR RAR  +EA+RKGRH+GYGKR+GT  AR+P K              R+YR++KK+DKH+YH++Y++ KGN FKNK+ L+E I K K E  R K L+DQ +A+R KN
Sbjct:   47 DGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKN 166          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.842e-30
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = -1
Query:  348 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAK 707
            KDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ +             RKYRES KIDKH+YH +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+
Sbjct:   46 KDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 4.842e-30
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = -1
Query:  348 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAK 707
            KDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+ +             RKYRES KIDKH+YH +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+
Sbjct:   46 KDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 130.568 bits (327), Expect = 8.260e-30
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = -1
Query:  345 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAREKTLSDQFEAKRAKN 707
            K+G I++K   +HS+SR R   ++KR+GRHSGYGKRKGTREARLP+++              KYR++ KIDKH+YH +Y + KGN FK+KR L+E I ++KA+  REK L+++ EA+R KN
Sbjct:   46 KNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKN 166          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_PYRAB (50S ribosomal protein L19e OS=Pyrococcus abyssi GN=rpl19e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = -1
Query:  390 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIPKSKAEKAR 707
            K+G I +KP K  SR RAR   E K+KGRH G G RKG + AR+  K              RK +E KKID+  Y  +Y++ KG  FK+K  L   + +    K R
Sbjct:   46 KEGVIKKKPVKGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKEQKKIDRRTYRMLYIRAKGGQFKSKHQLYMFLEEHNLLKKR 151          
BLAST of CF835897 vs. ExPASy Swiss-Prot
Match: RL19_PYRHO (50S ribosomal protein L19e OS=Pyrococcus horikoshii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 40/93 (43.01%), Postives = 51/93 (54.84%), Query Frame = -1
Query:  429 KDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVL 707
            K+G I +KP +  SR RAR   E K+KGRH G G RKG + AR+  K              RK +E KKID+  Y  +Y++ KG  FKNK  L
Sbjct:   46 KEGVIRKKPIEGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRRELRKLKEQKKIDRKTYRMLYIRAKGGQFKNKHQL 138          
The following BLAST results are available for this feature:
BLAST of CF835897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RL19_XENLA1.718e-3560.8360S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_ICTPU2.481e-3458.3360S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_DANRE7.219e-3457.5060S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_DICDI4.679e-3359.6660S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19_CAEEL4.380e-3153.3360S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19B_SCHPO4.842e-3052.5060S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19A_SCHPO4.842e-3052.5060S ribosomal protein L19-A OS=Schizosaccharomyces... [more]
RL19_YEAST8.260e-3050.4160S ribosomal protein L19 OS=Saccharomyces cerevis... [more]
RL19_PYRAB2.669e-1239.6250S ribosomal protein L19e OS=Pyrococcus abyssi GN... [more]
RL19_PYRHO4.553e-1243.0150S ribosomal protein L19e OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835897 ID=CF835897; Name=CF835897; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTTTTTTAATGAACATAATACCTCATCCCCTTTCATAACA
AGAAAACTACAAACGGGTTCATATGGGTTCCCACATTCAAGGCGTTTATA
AGTAAATAATTTGCCATTAAACAGAAAACAAAATAACTTGGGAAACAAAC
TCCTACAAAGAAACCAGAACCAACATTAACATATATAAGTTATCAATCTT
CAGTCTCCATCATCGATGTATCAGCGATCACTTCTTAGCTTTCTTAGCTC
CCTCAGCTGGTTGGGGTGCTGGTACTGCCTTCTCTCCAGGTCCCTGTGCT
AGTCGCTCTTCTCTCCTGGCCAGCTTTCTCTCCCTGCTGGCCTTGTTCTT
GGCGCGCTTAGCCTCAAACTGGTCAGAAAGAGTCTTCTCTCTTGCCTTTT
CAGCCTTTGACTTGGGGATACTCTCCATGAGGACACGCTTGTTCTTAAAT
ACATTACCCTTGACCTTCATGTACATGTCATGGTACATGTGCTTGTCAAT
TTTCTTCGACTCACGGTATTTGCGGAGCAACCGCCTGAGCACACGCATCC
TTCTCATCCAGAGGATTTTGGTGGGAAGCCTCGCCTCCCTAGTACCCTTT
CTCTTACCATATCCAGAGTGACGGCCCTTCCTCTTGGCTTCCTTCATTCT
GCGAGCGCGAGAACGGGAGTGGATCTTTGTTGGCTTCCTGATGATGAAAC
CATCCTT
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