CF835907

Overview
NameCF835907
Unique NameCF835907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 3.862e-61
Identity = 117/198 (59.09%), Postives = 146/198 (73.74%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PL++ V+AT     A   +++AV+VG  PR+EGMERKD++  NV I+K+Q +ALE++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLQDVIATDKEEIAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGTALEKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVIIWGNHSSTQYPDVNHAKV 200          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDHC_CHICK (Malate dehydrogenase, cytoplasmic OS=Gallus gallus GN=MDH1 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.043e-61
Identity = 116/199 (58.29%), Postives = 148/199 (74.37%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            EP+RVLVTGAAGQI Y+L+  IA+G + G +QP++L +LDI P    L GV MEL D A PL++ V+ T     A   ++IA++VG  PR+EGMERKD++  NV I+K+Q +AL+++A    KV+VV NPANTN LI  + APSIP +N +CLTRLDHNRA  QI+ KL V  +DVKNVIIWGNHSS+QYPDVNHA VN
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIAKGDVFGKEQPLVLVLLDITPMMTVLEGVVMELQDCALPLLREVIPTDKEEVAFKDLDIAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKTVKVVVVGNPANTNCLIASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTSNDVKNVIIWGNHSSTQYPDVNHAKVN 201          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 232.261 bits (591), Expect = 1.917e-60
Identity = 115/198 (58.08%), Postives = 145/198 (73.23%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PL+K V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKV 200          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 232.261 bits (591), Expect = 1.917e-60
Identity = 115/198 (58.08%), Postives = 145/198 (73.23%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PL+K V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKV 200          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 7.283e-60
Identity = 115/198 (58.08%), Postives = 145/198 (73.23%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PL+K V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +ALE++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDV+HA V
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALEKYAKKSVKVIVVGNPANTNCLTACKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVSHAKV 200          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDHC_XENLA (Malate dehydrogenase, cytoplasmic OS=Xenopus laevis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.242e-59
Identity = 115/198 (58.08%), Postives = 147/198 (74.24%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            EPV+VLVTGAAGQI Y+L+  IA+G + G DQP+IL +LDI P    L GV MEL D A PL+K V+AT     A   +++A++VG  PR+EGMERKD++  NV I+K+Q +AL +++  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KLNV   DVKNVIIWGNHSS+QYPD +HA+V
Sbjct:    3 EPVKVLVTGAAGQIAYSLLFGIAKGDVFGKDQPLILVLLDITPMMTVLEGVVMELQDCALPLLKEVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALNKYSKKSVKVIVVGNPANTNCLTALKSAPSIPKENFSCLTRLDHNRAKAQIALKLNVASDDVKNVIIWGNHSSTQYPDASHASV 200          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDHC_ECHGR (Malate dehydrogenase, cytoplasmic OS=Echinococcus granulosus GN=MDH PE=2 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.767e-59
Identity = 111/197 (56.35%), Postives = 145/197 (73.60%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            P+RVL+TGAAGQI Y L  M+A G + G DQ +ILH+LDIP A   L+GV MEL D AF ++ G+V T    EA T +++A+MVG  PRK+GMER+D++S NV I+K Q  AL+++A    KVLVV NPANTN LI+ ++APSIP +N T LTRLDHNRA+ Q++ K  V  + VKNV IWGNHS+ Q+PD++HA V
Sbjct:    4 PLRVLITGAAGQIAYNLSNMVANGNLFGKDQQIILHLLDIPEAKTVLDGVVMELQDCAFTVLAGIVPTHCLKEAFTDIDVALMVGAMPRKQGMERRDLLSSNVKIFKEQGEALDKYAKKTVKVLVVGNPANTNCLIMSKYAPSIPKENFTALTRLDHNRAIYQVAAKAGVPNTCVKNVCIWGNHSNKQFPDLSHAVV 200          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.721e-59
Identity = 117/200 (58.50%), Postives = 144/200 (72.00%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+I PA +ALNGV MEL D AFPL+  V+ + D + A    + A++VG  PRK GMER D++  N  I+K Q  AL   A+ N KVLVV NPANTNALI ++ AP +  K  T + RLDHNRAL Q++EK    VSD+KNV IWGNHSS+QYPD++ ATVN
Sbjct:    4 KQPVRVAVTGAAGQIGYSLLFRIAAGDMLGQDQPVILQLLEITPALKALNGVVMELRDGAFPLLADVITSDDPMVAFKDADYALLVGAMPRKAGMERGDLLGANGGIFKPQGEALGAVASRNVKVLVVGNPANTNALIAQQNAPDLDPKCFTAMVRLDHNRALSQLAEKTGAAVSDIKNVTIWGNHSSTQYPDLSQATVN 203          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDHA_DICDI (Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.052e-58
Identity = 116/226 (51.33%), Postives = 153/226 (67.70%), Query Frame = 3
Query:    3 PSKLSFSRFTGKIFSFPVIHL*SELMAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            P KL   +   +  ++ ++++ + +    P++VLVTGAAGQI Y+L+ MIA G M G  QPVILH+LDIP  A+AL GV MEL D ++PL++ VVATTD   A   +N+A++VG FPR  GM+RKD++  NVSI+K Q  AL ++A+   KVLVV NPANTNAL     A  +P  N + LTRLD NRA   ISEK+   V +V NVIIWGNHS +Q PDVNH  +
Sbjct:   32 PYKLGGGQILDQSKAWSLVNVTANVDQVTPIKVLVTGAAGQIAYSLMFMIASGQMFGPHQPVILHLLDIPKMADALKGVVMELQDCSYPLLQSVVATTDIQTAFLHINVAILVGAFPRGPGMQRKDLLKVNVSIFKEQGEALNKYASRGVKVLVVGNPANTNALTALMKASDLPTSNFSALTRLDQNRAQSMISEKVGTNVDNVHNVIIWGNHSQTQVPDVNHGYI 257          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_THEFY (Malate dehydrogenase OS=Thermobifida fusca (strain YX) GN=mdh PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.794e-58
Identity = 115/202 (56.93%), Postives = 143/202 (70.79%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            MAK PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+IP A +A  G  MEL D AFPL+ GV    D  +A  GVN+A++VG  PR +GMER+D++  N  I+  Q +A+   AA + +VLVV NPANTNALI +  AP IPA   T +TRLDHNRAL Q++ KLNV VSD+K + IWGNHS++QYPD+ HA VN
Sbjct:    1 MAKAPVNVTVTGAAGQIGYALLFRIASGQLLGVDTPVRLRLLEIPQAIKAAEGTAMELDDCAFPLLAGVDIYDDPRKAFDGVNVALLVGARPRTKGMERRDLLEANGGIFGPQGAAINDGAADDVRVLVVGNPANTNALIAQAHAPDIPADRFTAMTRLDHNRALSQLAAKLNVSVSDIKKLTIWGNHSATQYPDIFHAEVN 202          
The following BLAST results are available for this feature:
BLAST of CF835907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
MDHC_MOUSE3.862e-6159.09Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDHC_CHICK5.043e-6158.29Malate dehydrogenase, cytoplasmic OS=Gallus gallus... [more]
MDHC_PIG1.917e-6058.08Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDHC_BOVIN1.917e-6058.08Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]
MDHC_FELCA7.283e-6058.08Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDHC_XENLA1.242e-5958.08Malate dehydrogenase, cytoplasmic OS=Xenopus laevi... [more]
MDHC_ECHGR2.767e-5956.35Malate dehydrogenase, cytoplasmic OS=Echinococcus ... [more]
MDH_DEIRA4.721e-5958.50Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]
MDHA_DICDI1.052e-5851.33Probable malate dehydrogenase 1 OS=Dictyostelium d... [more]
MDH_THEFY1.794e-5856.93Malate dehydrogenase OS=Thermobifida fusca (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835907 ID=CF835907; Name=CF835907; organism=Citrus sinensis; type=EST; length=691bp
CTCCATCGAAGCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGC
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