CF835907

Overview
NameCF835907
Unique NameCF835907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_NOCSJ (Malate dehydrogenase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=mdh PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.377e-50
Identity = 103/201 (51.24%), Postives = 138/201 (68.66%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFP + GV    DA +   GVN+A++VG  PR  GMER D++S N +I+ AQ  AL + AA + ++ V  NPANTNALI    AP IP    + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPDV HA +
Sbjct:    1 MSSTPLKVAVTGAAGQIGYSLLFRLASGSLLG-DRPIELRLLEITPALKALEGVVMELDDCAFPNLAGVQIGDDAEQIFDGVNLALLVGARPRGPGMERGDLLSANGAIFTAQGKALNKVAADDVRIGVTGNPANTNALIAMTNAPDIPQARFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDVFHAEI 200          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.005e-50
Identity = 99/197 (50.25%), Postives = 126/197 (63.96%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            P  V VTGAAG IGYA +  IA G MLG D P+ L +L+IPPA  A  G  MEL D+AFPL+  V    D      G ++A+++G  PR +GMER D+++ N  I+  Q  A+ Q AA   +VLVV NPANTNAL+    AP +PA+  T LTRLDHNRA+ Q++      V D+  V IWGNHSS+QYPD+ HA V
Sbjct:    7 PAVVTVTGAAGSIGYAALFRIAAGAMLGPDTPIRLRLLEIPPAVSAAEGTAMELDDSAFPLLLDVEVHDDPKRGFDGTDVALLIGSRPRSKGMERGDLLAANGQIFTVQGRAINQVAADGVRVLVVGNPANTNALVAANNAPDVPAERFTALTRLDHNRAIAQLARHSGAAVRDISRVTIWGNHSSTQYPDIFHARV 203          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_MYCLE (Malate dehydrogenase OS=Mycobacterium leprae GN=mdh PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.231e-50
Identity = 101/201 (50.25%), Postives = 136/201 (67.66%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AF L+ GV    D  +   GVN+A++VG  PR  GMER D++  N +I+ AQ  AL   AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K    V+D++ + IWGNHS++QYPDV HA +
Sbjct:    1 MSPRPLKVAVTGAAGQIGYSLLFRLASGSLLGLDRPIELRLLEIEPALKALEGVVMELDDCAFLLLAGVEIGADPNKVFDGVNLALLVGARPRGPGMERGDLLEANGAIFTAQGKALNAVAAADIRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAIAQLATKTGSAVTDIRKMTIWGNHSATQYPDVFHAEI 201          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_RHOSR (Malate dehydrogenase OS=Rhodococcus sp. (strain RHA1) GN=mdh PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.832e-50
Identity = 99/197 (50.25%), Postives = 127/197 (64.47%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            P  V VTGAAG IGYA +  IA G MLG D P+ L +L+IP A  A  G  MEL D+AFPL++ +    D      G ++A+++G  PR +GMER D+++ N  I+  Q  AL Q AA   +VLVV NPANTNAL+    AP IPA+  T LTRLDHNRA+ Q++      V D++ V IWGNHSS+QYPD+ HA V
Sbjct:    7 PAVVTVTGAAGSIGYASLFRIAAGEMLGPDTPIRLRLLEIPSAVSAAEGTAMELDDSAFPLLRDIEVHDDPKRGFDGTDVALLIGSRPRSKGMERGDLLAANGQIFTVQGRALNQVAADGVRVLVVGNPANTNALVAANNAPDIPAERFTALTRLDHNRAIAQLARHSGAAVKDIRRVAIWGNHSSTQYPDIFHARV 203          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_XYLFA (Malate dehydrogenase OS=Xylella fastidiosa GN=mdh PE=3 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 8.923e-50
Identity = 104/202 (51.49%), Postives = 137/202 (67.82%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K  VRV VTGAAGQIGY+L+  IA G M G D+PVIL ML++P   A  AL GV MEL D AFPL+ G+V T +   A    ++A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  K+ T + RLDHNRAL Q+S KL+  V++++ +I+WGNHS + YPD   AT +
Sbjct:    2 KSLVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVGTDNPDIAFKDADVALLVGSRPRGPGMERKDLLMENAKIFTAQGAALNKVARRDVKVLVVGNPANTNAYIAMKSAPDLNPKHFTAMLRLDHNRALSQLSTKLSKPVANIEKLIVWGNHSPTMYPDYRFATAD 203          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_POLNA (Malate dehydrogenase OS=Polaromonas naphthalenivorans (strain CJ2) GN=mdh PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.165e-49
Identity = 103/203 (50.74%), Postives = 137/203 (67.49%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M+K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P     +AL GV MEL D AFPL+  + A +D + A    + A++VG  PR  GMER ++++ N +I+ AQ  AL   A+ + +VLVV NPANTNA I  + AP +PAKN T + RLDHNRA  QI+ K    V+D++ + +WGNHS + Y D   AT+
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPVEGPQKALKGVMMELDDCAFPLLVEMTAHSDPMTAFKDADYALLVGSRPRGPGMERAELLAVNGAIFTAQGKALNAVASRDVRVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQIAAKTGKAVADIEKLTVWGNHSPTMYADYRFATI 203          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_NOCFA (Malate dehydrogenase OS=Nocardia farcinica GN=mdh PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.522e-49
Identity = 96/197 (48.73%), Postives = 128/197 (64.97%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            PV V VTGAAGQI Y L+  IA G MLG   P+ L +L+IP A  +L GV MEL D AFPL+  +  + D      G N+A++VG  PR  GMER D+++ N  I+  Q  A+   AA + KVLVV NPANTNA I    AP +PA+  T +TRLDHNRA+ Q+++K     +++  + +WGNHS++QYPD+ HATV
Sbjct:    9 PVTVTVTGAAGQIAYGLLFRIASGAMLGPHTPIRLRLLEIPAAVASLEGVAMELEDGAFPLLDAIDISDDPWTGFAGANVALLVGARPRTAGMERADLLAANGPIFTDQGQAINAVAADDVKVLVVGNPANTNAFIAMSNAPDVPAERFTAMTRLDHNRAIAQLAKKTGAPATEIHRIAVWGNHSATQYPDLTHATV 205          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_MYCVP (Malate dehydrogenase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.988e-49
Identity = 98/197 (49.75%), Postives = 124/197 (62.94%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            PV V VTGAAG IGYA +  IA G MLG   PV L +L++P A  A  GV MEL D AFPL+ G     D   A  GV++A+++G  PR +GMER D++  N  I+     AL   A+P+ +VLVV NPANTNAL+    AP IPA   T LTRLDHNRA+   +    V V+++  + IWGNHS +QYPD+ HA V
Sbjct:    8 PVTVAVTGAAGHIGYAALFRIAAGAMLGHTTPVTLRLLELPDAVRAAEGVVMELEDGAFPLLAGTEIYDDPTRAFDGVDVALLIGARPRTKGMERADLLGANAEIFATSGKALNAGASPDVRVLVVGNPANTNALVASAHAPDIPADRFTALTRLDHNRAVAATARHSGVPVTEISRMTIWGNHSPTQYPDIFHAVV 204          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_CORGL (Malate dehydrogenase OS=Corynebacterium glutamicum GN=mdh PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.988e-49
Identity = 95/195 (48.72%), Postives = 131/195 (67.18%), Query Frame = 3
Query:   96 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            +V VTGAAGQI Y+L+  IA G + GTD PV L +L+IP A     GV MEL+D+AFPL++ +  T DA EA  G N A +VG  PR +G ER D+++ N  I+  Q  A+  +AA + +VLVV NPANTNALI    AP +PA     + RLDHNRA+ Q++ KL    ++  N+++WGNHS++Q+PD+ +ATV
Sbjct:   11 KVTVTGAAGQISYSLLWRIANGEVFGTDTPVELKLLEIPQALGGAEGVAMELLDSAFPLLRNITITADANEAFDGANAAFLVGAKPRGKGEERADLLANNGKIFGPQGKAINDNAADDIRVLVVGNPANTNALIASAAAPDVPASRFNAMMRLDHNRAISQLATKLGRGSAEFNNIVVWGNHSATQFPDITYATV 205          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH1_BURVG (Malate dehydrogenase 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.988e-49
Identity = 97/202 (48.02%), Postives = 137/202 (67.82%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            M+K   RV VTGAAGQI Y+L+  IARG +LG DQPVIL +L++P A +AL GV MEL D AFPL++ V  + D   A    + A++VG  PR +GMER+D+++ N +I+++Q  AL + A    KVLVV NPANTNA + + +AP +PA  IT + RLDHNRA+ +++ +  V V  V  + +WGNHS + +PD  HA ++
Sbjct:    1 MSKPARRVAVTGAAGQIAYSLLFRIARGDLLGDDQPVILQLLELPHALDALRGVVMELEDCAFPLLQSVEISDDPRVAFRDADYAMLVGSRPRGKGMERRDLLAANAAIFRSQGEALNEVANRQVKVLVVGNPANTNAWVARHYAPDLPADAITAMIRLDHNRAVSKLAARCGVTVDAVSRMAVWGNHSPTMFPDYRHALID 202          
The following BLAST results are available for this feature:
BLAST of CF835907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
MDH_NOCSJ1.377e-5051.24Malate dehydrogenase OS=Nocardioides sp. (strain B... [more]
MDH_RHOOB4.005e-5050.25Malate dehydrogenase OS=Rhodococcus opacus (strain... [more]
MDH_MYCLE5.231e-5050.25Malate dehydrogenase OS=Mycobacterium leprae GN=md... [more]
MDH_RHOSR6.832e-5050.25Malate dehydrogenase OS=Rhodococcus sp. (strain RH... [more]
MDH_XYLFA8.923e-5051.49Malate dehydrogenase OS=Xylella fastidiosa GN=mdh ... [more]
MDH_POLNA1.165e-4950.74Malate dehydrogenase OS=Polaromonas naphthalenivor... [more]
MDH_NOCFA1.522e-4948.73Malate dehydrogenase OS=Nocardia farcinica GN=mdh ... [more]
MDH_MYCVP1.988e-4949.75Malate dehydrogenase OS=Mycobacterium vanbaalenii ... [more]
MDH_CORGL1.988e-4948.72Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH1_BURVG1.988e-4948.02Malate dehydrogenase 1 OS=Burkholderia vietnamiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835907 ID=CF835907; Name=CF835907; organism=Citrus sinensis; type=EST; length=691bp
CTCCATCGAAGCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGC
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