CF835907

Overview
NameCF835907
Unique NameCF835907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:82..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_AKKM8 (Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.471e-52
Identity = 104/199 (52.26%), Postives = 134/199 (67.34%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            K P+ V VTGAAGQI Y+L+  IA G MLG DQP+ L +L+IPPA  AL GV MEL DAAFPL+  +V T+D  EA  G N  ++VG  PRK GMERKD++  N  ++  Q  A+ + AA + +VLVV NP NTNALI    A  +P+     +TRLD NRA  Q++EK  V V++V N+ IWGNHSS+QYPD  +A +
Sbjct:    2 KTPITVTVTGAAGQIAYSLLFRIASGSMLGPDQPINLRLLEIPPAMNALEGVVMELRDAAFPLVNEIVPTSDPDEAFAGANWCLLVGSVPRKAGMERKDLLDINGKVFIGQGQAIARSAAKDVRVLVVGNPCNTNALIAMHNASGVPSDRFFAMTRLDENRAKSQLAEKAGVHVTEVTNMAIWGNHSSTQYPDFTNARI 200          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_ACIAD (Malate dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.471e-52
Identity = 108/202 (53.47%), Postives = 137/202 (67.82%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPL+ G++ T D   A    + A++VG  PR  GMER D++  N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL QI++K  V V+D++ + +WGNHS + Y D   AT N
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEIPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVNGEIFIGQGQALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQIAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN 203          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_ACIAC (Malate dehydrogenase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.471e-52
Identity = 108/203 (53.20%), Postives = 138/203 (67.98%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M+K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPL+ G+ A +D + A    + A++VG  PR  GMER D+++ N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRA  QI+ K   +V +++ + +WGNHS + Y D   AT+
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVMMELEDCAFPLLAGMEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQIAAKTGGKVGEIEKLTVWGNHSPTMYADYRFATI 203          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH1_BURTA (Malate dehydrogenase 1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.471e-52
Identity = 105/200 (52.50%), Postives = 135/200 (67.50%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHAT 677
            MAK   RV VTGAAGQI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   AT
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFAT 200          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.921e-52
Identity = 106/200 (53.00%), Postives = 137/200 (68.50%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+IP A +AL GV MEL D AFPL+ G+ AT D   A    + A++VG  PRK GMER+D++  N  I+  Q  AL + A  + KVLVV NPANTNALI  + AP +  +N T +TRLDHNRA  Q+++K    V  ++ + +WGNHSS+ +PD+ HA V+
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVD 201          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.921e-52
Identity = 106/200 (53.00%), Postives = 137/200 (68.50%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+IP A +AL GV MEL D AFPL+ G+ AT D   A    + A++VG  PRK GMER+D++  N  I+  Q  AL + A  + KVLVV NPANTNALI  + AP +  +N T +TRLDHNRA  Q+++K    V  ++ + +WGNHSS+ +PD+ HA V+
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVD 201          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_THET2 (Malate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mdh PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.921e-52
Identity = 106/200 (53.00%), Postives = 137/200 (68.50%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+IP A +AL GV MEL D AFPL+ G+ AT D   A    + A++VG  PRK GMER+D++  N  I+  Q  AL + A  + KVLVV NPANTNALI  + AP +  +N T +TRLDHNRA  Q+++K    V  ++ + +WGNHSS+ +PD+ HA V+
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVD 201          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_MYCPA (Malate dehydrogenase OS=Mycobacterium paratuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.921e-52
Identity = 102/201 (50.75%), Postives = 139/201 (69.15%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV    D  +   G N+A++VG  PR  GMER D++  N +I+ AQ  AL + AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q+++K   +V+D+K + IWGNHS++QYPD+ HA V
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGADPNKIFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEVAADDIRVGVTGNPANTNALIAMSNAPDIPRERFSALTRLDHNRAISQLAKKTGAKVTDIKKMTIWGNHSATQYPDIFHAEV 201          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_BURCH (Malate dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=mdh PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.921e-52
Identity = 105/200 (52.50%), Postives = 135/200 (67.50%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHAT 677
            MAK   RV VTGAAGQI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   AT
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFAT 200          
BLAST of CF835907 vs. ExPASy Swiss-Prot
Match: MDH_BURCC (Malate dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.921e-52
Identity = 105/200 (52.50%), Postives = 135/200 (67.50%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHAT 677
            MAK   RV VTGAAGQI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q +AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   AT
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFAT 200          
The following BLAST results are available for this feature:
BLAST of CF835907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
MDH_AKKM81.471e-5252.26Malate dehydrogenase OS=Akkermansia muciniphila (s... [more]
MDH_ACIAD1.471e-5253.47Malate dehydrogenase OS=Acinetobacter sp. (strain ... [more]
MDH_ACIAC1.471e-5253.20Malate dehydrogenase OS=Acidovorax avenae subsp. c... [more]
MDH1_BURTA1.471e-5252.50Malate dehydrogenase 1 OS=Burkholderia thailandens... [more]
MDH_THETH1.921e-5253.00Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]
MDH_THET81.921e-5253.00Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THET21.921e-5253.00Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_MYCPA1.921e-5250.75Malate dehydrogenase OS=Mycobacterium paratubercul... [more]
MDH_BURCH1.921e-5252.50Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_BURCC1.921e-5252.50Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835907 ID=CF835907; Name=CF835907; organism=Citrus sinensis; type=EST; length=691bp
CTCCATCGAAGCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGC
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