CF835908

Overview
NameCF835908
Unique NameCF835908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_ALCBS (Malate dehydrogenase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.488e-22
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            IIK R  S A  AA+ A DH+R W  GT EG WVS G Y DGSY +  G+IYSFP T +NG+W I QGL +++FSR K+  T +EL+EE+
Sbjct:  231 IIKARGASSAASAANAAVDHMRSWALGTDEGDWVSMGIYSDGSYGIQEGLIYSFPCTCKNGDWTIVQGLEVNDFSRGKMQATEQELAEER 320          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 103.605 bits (257), Expect = 7.239e-22
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDG-SYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            +IK RKLS A+ AA   CDH+RD  FGTPEG +VS G   DG SY VP  ++YSFPVT ++  W I +GL I++FSR+K+DLT +EL+EEK
Sbjct:  234 VIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEK 324          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_HALHL (Malate dehydrogenase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.454e-22
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            IIK R  S A  AAS A DH+RDW  GTPEG W S     DGSY +  G+IYSFPVT R G++ I  GL++D+FSR ++D T  EL+EE+
Sbjct:  229 IIKARGASSAASAASAAIDHMRDWALGTPEGEWTSMAVPSDGSYGIEAGLIYSFPVTCRGGDYKIVSGLSVDDFSRARMDQTAAELAEER 318          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_DEIDV (Malate dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.454e-22
Identity = 52/90 (57.78%), Postives = 61/90 (67.78%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R  S A  AAS A DH+RDW  GT EG WVS G   DGSY VP G+IY FPVT ++G++ I QGL I EFSR K+D T  EL EE+
Sbjct:  231 IIEARGASSAASAASAAIDHMRDWALGTSEGEWVSMGIPSDGSYGVPEGLIYGFPVTVKDGKYQIVQGLEISEFSRGKMDATARELEEER 320          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_ALHEH (Malate dehydrogenase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.235e-21
Identity = 51/90 (56.67%), Postives = 60/90 (66.67%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            IIK R  S A  AAS A DHIRDWV GTPEG W S     DGSY +  G+IYS+P   RNG++ I Q L IDEFSR+K+  T +EL EE+
Sbjct:  229 IIKARGASSAASAASSAIDHIRDWVLGTPEGEWTSMAVPSDGSYGIEKGIIYSYPCVCRNGDYEIVQDLEIDEFSREKMQATEKELVEER 318          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.235e-21
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDG-SYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            +IK RKLS A+ AA   CDH+RD  FGTPEG +VS G   DG SY +P  ++YSFPVT ++  W + +GL I++FSR+K+DLT +EL+EEK
Sbjct:  234 VIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIKDKTWKVVEGLPINDFSREKMDLTAKELAEEK 324          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_HUMAN (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 1.613e-21
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDG-SYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            +IK RKLS A+ AA   CDH+RD  FGTPEG +VS G   DG SY VP  ++YSFPV  +N  W   +GL I++FSR+K+DLT +EL+EEK
Sbjct:  234 VIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_THEFY (Malate dehydrogenase OS=Thermobifida fusca (strain YX) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.106e-21
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R  S A  AA+ A DH+ DWV GTPEG W S     DGSY VP G++ SFPV SRNG W I QGL I+EFSR+++D +  EL EE+
Sbjct:  231 IIEARGASSAASAANAAIDHVYDWVNGTPEGDWTSVALPSDGSYGVPEGLVSSFPVVSRNGSWEIVQGLEINEFSRERIDASVRELEEER 320          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_CELJU (Malate dehydrogenase OS=Cellvibrio japonicus (strain Ueda107) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.106e-21
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II  R  S A  AA+ A +HIRDW  GTP   WVS G Y DGSY +  G+IYSFP   +NG+W I QGL I+EFSR K+  T +EL EE+
Sbjct:  229 IIAARGASSAASAANAAINHIRDWALGTPANDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLDINEFSRAKMTATEKELQEER 318          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_XENTR (Malate dehydrogenase, cytoplasmic OS=Xenopus tropicalis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.751e-21
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDG-SYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            +IK RKLS A+ AA   CDH+RD  FGTP+G +VS G   DG SY +P  ++YSFP+T +N  W I +GL I++FSR+K+DLT +EL EEK
Sbjct:  234 VIKARKLSSAMSAAKAICDHVRDIWFGTPDGQFVSMGVISDGNSYGIPEDLMYSFPLTIKNKTWKIVEGLPINDFSREKMDLTAKELHEEK 324          
The following BLAST results are available for this feature:
BLAST of CF835908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
MDH_ALCBS2.488e-2254.44Malate dehydrogenase OS=Alcanivorax borkumensis (s... [more]
MDHC_PIG7.239e-2257.14Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDH_HALHL9.454e-2254.44Malate dehydrogenase OS=Halorhodospira halophila (... [more]
MDH_DEIDV9.454e-2257.78Malate dehydrogenase OS=Deinococcus deserti (strai... [more]
MDH_ALHEH1.235e-2156.67Malate dehydrogenase OS=Alkalilimnicola ehrlichei ... [more]
MDHC_BOVIN1.235e-2154.95Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]
MDHC_HUMAN1.613e-2156.04Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
MDH_THEFY2.106e-2155.56Malate dehydrogenase OS=Thermobifida fusca (strain... [more]
MDH_CELJU2.106e-2154.44Malate dehydrogenase OS=Cellvibrio japonicus (stra... [more]
MDHC_XENTR2.751e-2154.95Malate dehydrogenase, cytoplasmic OS=Xenopus tropi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835908 ID=CF835908; Name=CF835908; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTCCTTAAACAAAAAAAAAATTGTTATTGATAGTT
TGATACATAAATCACAAGGGGCCTTTAATATCCATTTATCCAGGAAAAGT
AACAAAACTCCAAAATCCCGATTTTCAAATGCAAAAATAACAACATAAAA
TGGAAAGGCTTCTCCCTCATCAAGGGGTCCCCCAGGTTTCAACAAGGGTT
TTATTCAAAACTGGAACTATACCAACTACTCAAACAAAGCTAAGGGCCTT
GGTAACCCACTATTGAAGGGAAAAAAGCTTTTAAAAAAAACATGAGTATG
GGAGGGCCTTCTCCTCGGAAAGCTCCTCTGGTGTCAAGTCCAACTTCTTC
CTTGAAAATTCATCAATGGTGAGTCCTTGAAAAATTGGCCATTCACCGTT
GCGGGAGGTTACTGGGAATGAATAAATGACCCCACCTGGGACATTGTATG
AACCATCAAAGTATCCCCCCTTGGAAACCCAGGGGCCCTCAGGAGTTCCA
AAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGAGC
CCTCGAGAGCTTTCTGGGTTTGATGATTG
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