CF835908

Overview
NameCF835908
Unique NameCF835908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig483 contig Csv1_Contig483:1..563. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_CORGL (Malate dehydrogenase OS=Corynebacterium glutamicum GN=mdh PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 40/90 (44.44%), Postives = 51/90 (56.67%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R  S A  AAS A DH+RDWV GT    W S      G+Y +P G+    P  SRNGEW I +GL I +F R ++D   +EL  E+
Sbjct:  234 IIEVRGKSSAASAASSAIDHMRDWVQGTEA--WSSAAIPSTGAYGIPEGIFVGLPTVSRNGEWEIVEGLEISDFQRARIDANAQELQAER 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_CORGB (Malate dehydrogenase OS=Corynebacterium glutamicum (strain R) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 40/90 (44.44%), Postives = 51/90 (56.67%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R  S A  AAS A DH+RDWV GT    W S      G+Y +P G+    P  SRNGEW I +GL I +F R ++D   +EL  E+
Sbjct:  234 IIEVRGKSSAASAASSAIDHMRDWVQGTEA--WSSAAIPSTGAYGIPEGIFVGLPTVSRNGEWEIVEGLEISDFQRARIDANAQELQAER 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHB_DICDI (Probable malate dehydrogenase 2, mitochondrial OS=Dictyostelium discoideum GN=mdhB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.238e-13
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = -3
Query:  311 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRN-GEWPIFQGLTIDEFSRKKLDLTPEELSEE 577
            II  R LS A  AAS A DH+RDW +GT  G W S   Y +G Y    G+ +SFPV   N G++ I +GL +D+FS+++ D T +EL  E
Sbjct:  251 IIAARGLSSAASAASAAIDHMRDWTYGT-NGQWTSMAIYSEGEYGADKGLYFSFPVIVDNKGKYEIVKGLKLDQFSQERFDATRKELLSE 339          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_LEPCP (Malate dehydrogenase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=mdh PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II  R +S A  AA+ A DH+RDW  GT  G WV+ G    G Y +P   ++ +PVT   GE+ I +GL ID FS++ ++ T  EL  EK
Sbjct:  233 IIAARGVSSAASAANAAIDHMRDWALGT-NGAWVTMGVPSKGEYGIPAETMFGYPVTCEGGEYKIVEGLPIDAFSQECINKTLAELEGEK 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_ACICJ (Malate dehydrogenase OS=Acidiphilium cryptum (strain JF-5) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            +I+ R  S A  AA+ A D +RDWV G+ +G WVS     DGSY +P G+++  PVT++ G       L ID F++ +LD+T  EL EE+
Sbjct:  231 VIEARGASSAASAANAAIDQVRDWVVGS-DGRWVSMAIPSDGSYGIPEGIMFGVPVTTQGGVVTRVPNLAIDAFAQSRLDITLNELKEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_CORDI (Malate dehydrogenase OS=Corynebacterium diphtheriae GN=mdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R  S A  AAS A DH+ DW+ GT +G W +     DGSY VP G+I+ FP  S +G+W I Q L + +F +  +     EL EE+
Sbjct:  230 IIEVRGKSSAASAASSAIDHMHDWINGT-DGQWRTAAIPSDGSYGVPEGLIFGFPTISEDGQWKIVQDLELSDFQKDGIARNVTELEEER 318          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH2_BURTA (Malate dehydrogenase 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  311 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEE 577
            II+ R  S A  AA+ A D +RDW+FG+ +G WVS     DGSY +  G+++  PV    G +   + + ID F+R+++DL+  EL EE
Sbjct:  231 IIEARGASSAASAANAAIDQMRDWIFGS-DGRWVSMSVPSDGSYGIAPGLMFGVPVICDGGRYERVKDIGIDAFARQRIDLSVRELQEE 318          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_DESPS (Malate dehydrogenase OS=Desulfotalea psychrophila GN=mdh PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDG-SYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            +IK R  S A  AAS A DH+R+WV G+  G WVS G Y  G SY +   +++S PV   +G+W    GL +  F R  L+ T  EL  E+
Sbjct:  229 VIKARGASSAASAASAAIDHMRNWVLGS-GGKWVSMGVYSRGNSYGLDEDIMFSLPVICEDGDWREVAGLELSSFQRAMLEATEAELQAER 318          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH2_RHOFD (Malate dehydrogenase 2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = -3
Query:  311 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEE 577
            I+  R L     AAS A D +RDW  GT  G W + G   DG+Y VP G+++ FPV +   ++ I  GL +D F+R  +D+   EL+ E
Sbjct:  234 ILAARGLYAEASAASAAIDQMRDWWLGT-RGEWTTMGVVSDGAYGVPAGLVFGFPVITDCRDYRIVPGLAVDAFARGMIDVNVRELTAE 321          
The following BLAST results are available for this feature:
BLAST of CF835908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
MDH_CORGL5.556e-1444.44Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_CORGB5.556e-1444.44Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDHB_DICDI1.238e-1345.56Probable malate dehydrogenase 2, mitochondrial OS=... [more]
MDH_LEPCP2.757e-1343.33Malate dehydrogenase OS=Leptothrix cholodnii (stra... [more]
MDH_ACICJ4.703e-1342.22Malate dehydrogenase OS=Acidiphilium cryptum (stra... [more]
MDH_CORDI1.048e-1242.22Malate dehydrogenase OS=Corynebacterium diphtheria... [more]
MDH2_BURTA8.869e-1240.45Malate dehydrogenase 2 OS=Burkholderia thailandens... [more]
MDH_DESPS2.581e-1141.76Malate dehydrogenase OS=Desulfotalea psychrophila ... [more]
MDH2_RHOFD4.402e-1139.33Malate dehydrogenase 2 OS=Rhodoferax ferrireducens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835908 ID=CF835908; Name=CF835908; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTCCTTAAACAAAAAAAAAATTGTTATTGATAGTT
TGATACATAAATCACAAGGGGCCTTTAATATCCATTTATCCAGGAAAAGT
AACAAAACTCCAAAATCCCGATTTTCAAATGCAAAAATAACAACATAAAA
TGGAAAGGCTTCTCCCTCATCAAGGGGTCCCCCAGGTTTCAACAAGGGTT
TTATTCAAAACTGGAACTATACCAACTACTCAAACAAAGCTAAGGGCCTT
GGTAACCCACTATTGAAGGGAAAAAAGCTTTTAAAAAAAACATGAGTATG
GGAGGGCCTTCTCCTCGGAAAGCTCCTCTGGTGTCAAGTCCAACTTCTTC
CTTGAAAATTCATCAATGGTGAGTCCTTGAAAAATTGGCCATTCACCGTT
GCGGGAGGTTACTGGGAATGAATAAATGACCCCACCTGGGACATTGTATG
AACCATCAAAGTATCCCCCCTTGGAAACCCAGGGGCCCTCAGGAGTTCCA
AAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGAGC
CCTCGAGAGCTTTCTGGGTTTGATGATTG
back to top