CF835908

Overview
NameCF835908
Unique NameCF835908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_XENLA (Malate dehydrogenase, cytoplasmic OS=Xenopus laevis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.751e-21
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDG-SYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            +IK RKLS A+ AA   CDH+RD  FGTPEG +VS G   DG SY VP  ++YSFP+T +N  W I +GL I++FSR+K+D+T +EL +EK
Sbjct:  234 VIKARKLSSAMSAAKAICDHVRDIWFGTPEGQFVSMGVISDGNSYGVPEDLMYSFPLTIKNKTWKIVEGLCINDFSREKMDITAKELQDEK 324          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_TERTT (Malate dehydrogenase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.593e-21
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            IIK R  S A  AA+ A  H+RDW  G+PEG WVS G Y DGSY +  G+IYSFP   +NG+W I QGL+IDEFS+ ++  T  EL  E+
Sbjct:  229 IIKARGASSAASAANAAIFHMRDWALGSPEGDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLSIDEFSQARMTATETELQGER 318          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_AZOSB (Malate dehydrogenase OS=Azoarcus sp. (strain BH72) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.593e-21
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DHIRDWV G+  G WV+ G   DGSY +P GVIY FPVT+ NGE+ I QGL IDEFSR+++ +T  EL EE+
Sbjct:  234 IIEARGLSSAASAANAAIDHIRDWVLGS-NGEWVTMGIPSDGSYGIPEGVIYGFPVTTENGEYKIVQGLEIDEFSRERMTVTLNELLEER 322          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_ACIBY (Malate dehydrogenase OS=Acinetobacter baumannii (strain AYE) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.128e-21
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDW  GT  G WV+ G   DGSY +P GV++ FPVT+ NGE+ I QGL IDEFSR++++ T  EL EE+A
Sbjct:  232 IIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_ACIBT (Malate dehydrogenase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=mdh PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.128e-21
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDW  GT  G WV+ G   DGSY +P GV++ FPVT+ NGE+ I QGL IDEFSR++++ T  EL EE+A
Sbjct:  232 IIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_ACIBS (Malate dehydrogenase OS=Acinetobacter baumannii (strain SDF) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.128e-21
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDW  GT  G WV+ G   DGSY +P GV++ FPVT+ NGE+ I QGL IDEFSR++++ T  EL EE+A
Sbjct:  232 IIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_ACIBC (Malate dehydrogenase OS=Acinetobacter baumannii (strain ACICU) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.128e-21
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDW  GT  G WV+ G   DGSY +P GV++ FPVT+ NGE+ I QGL IDEFSR++++ T  EL EE+A
Sbjct:  232 IIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_ACIB5 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB0057) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.128e-21
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDW  GT  G WV+ G   DGSY +P GV++ FPVT+ NGE+ I QGL IDEFSR++++ T  EL EE+A
Sbjct:  232 IIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_ACIB3 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB307-0294) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.128e-21
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDW  GT  G WV+ G   DGSY +P GV++ FPVT+ NGE+ I QGL IDEFSR++++ T  EL EE+A
Sbjct:  232 IIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHA_DICDI (Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.004e-21
Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            +I  RKLS A  AA+    H+RDW+ GT +G  VS   Y DGSYNVP G+I+SFPVT  NG+W I QGL I+  +++K+D T +EL EEK
Sbjct:  294 VIAARKLSSAASAANAIVGHVRDWLLGTKDGEHVSMAVYSDGSYNVPKGLIFSFPVTCHNGQWTIVQGLKINSSTQQKIDATIKELQEEK 383          
The following BLAST results are available for this feature:
BLAST of CF835908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
MDHC_XENLA2.751e-2154.95Malate dehydrogenase, cytoplasmic OS=Xenopus laevi... [more]
MDH_TERTT3.593e-2153.33Malate dehydrogenase OS=Teredinibacter turnerae (s... [more]
MDH_AZOSB3.593e-2157.78Malate dehydrogenase OS=Azoarcus sp. (strain BH72)... [more]
MDH_ACIBY6.128e-2154.95Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBT6.128e-2154.95Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBS6.128e-2154.95Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBC6.128e-2154.95Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIB56.128e-2154.95Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIB36.128e-2154.95Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDHA_DICDI8.004e-2153.33Probable malate dehydrogenase 1 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835908 ID=CF835908; Name=CF835908; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTCCTTAAACAAAAAAAAAATTGTTATTGATAGTT
TGATACATAAATCACAAGGGGCCTTTAATATCCATTTATCCAGGAAAAGT
AACAAAACTCCAAAATCCCGATTTTCAAATGCAAAAATAACAACATAAAA
TGGAAAGGCTTCTCCCTCATCAAGGGGTCCCCCAGGTTTCAACAAGGGTT
TTATTCAAAACTGGAACTATACCAACTACTCAAACAAAGCTAAGGGCCTT
GGTAACCCACTATTGAAGGGAAAAAAGCTTTTAAAAAAAACATGAGTATG
GGAGGGCCTTCTCCTCGGAAAGCTCCTCTGGTGTCAAGTCCAACTTCTTC
CTTGAAAATTCATCAATGGTGAGTCCTTGAAAAATTGGCCATTCACCGTT
GCGGGAGGTTACTGGGAATGAATAAATGACCCCACCTGGGACATTGTATG
AACCATCAAAGTATCCCCCCTTGGAAACCCAGGGGCCCTCAGGAGTTCCA
AAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGAGC
CCTCGAGAGCTTTCTGGGTTTGATGATTG
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