CF835908

Overview
NameCF835908
Unique NameCF835908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig483 contig Csv1_Contig483:1..563. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_MYCPA (Malate dehydrogenase OS=Mycobacterium paratuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.045e-20
Identity = 49/90 (54.44%), Postives = 60/90 (66.67%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II  R  S A  AAS   D  RDW+ GTP G WVS     DGSY VP G+I SFPVT+++G+W I QGL IDEFSR ++D T  EL++E+
Sbjct:  231 IIDARGASSAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADER 320          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_MYCA1 (Malate dehydrogenase OS=Mycobacterium avium (strain 104) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.045e-20
Identity = 49/90 (54.44%), Postives = 60/90 (66.67%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II  R  S A  AAS   D  RDW+ GTP G WVS     DGSY VP G+I SFPVT+++G+W I QGL IDEFSR ++D T  EL++E+
Sbjct:  231 IIDARGASSAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADER 320          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_SACEN (Malate dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.365e-20
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R  S A  AA+ A DHI  WV GTPEG W S     DGSY VP G+I SFPV +R+G + I QGL IDEFSR+++D +  ELSEE+
Sbjct:  230 IIEARGASSAASAANAAIDHIHTWVNGTPEGDWTSAAVVSDGSYGVPEGLISSFPVVARDGRYEIVQGLEIDEFSRQRIDASVNELSEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BDEBA (Malate dehydrogenase OS=Bdellovibrio bacteriovorus GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.365e-20
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AAS A DHIRDW  GT  G WV+ G   DGSY++P G++Y FPVT +NGE+ I +GL ID FSR+K++ T +EL+EEK
Sbjct:  240 IIEARGLSSAASAASAAVDHIRDWWLGT-NGEWVTMGIPSDGSYDIPEGIMYGFPVTCKNGEYEIVKGLEIDAFSREKMNNTLKELNEEK 328          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_ARTAT (Malate dehydrogenase OS=Arthrobacter aurescens (strain TC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.365e-20
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R  S A  AAS   D  RDW+ GTPEG WVS     DGSY VP G++YS+PVT+  G W I +GL +++FSR+K+D T  EL +E+A
Sbjct:  230 IIEARGASSAASAASATIDAARDWLLGTPEGDWVSMAVASDGSYGVPEGLMYSYPVTTSGGNWEIVEGLEVNDFSRRKMDATAAELFDERA 320          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.365e-20
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDG-SYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            +IK RKLS A+ AA    DHIRD  FGTPEG +VS G   DG SY VP  ++YSFPV  +N  W   +GL I++FSR+K+DLT +EL+EEK
Sbjct:  234 VIKARKLSSAMSAAKAIADHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_RAT (Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.783e-20
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDG-SYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            +IK RKLS A+ AA    DHIRD  FGTPEG +VS G   DG SY VP  ++YSFPV  +N  W   +GL I++FSR+K+DLT +EL+EEK
Sbjct:  234 VIKARKLSSAMSAAKAISDHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDHC_CHICK (Malate dehydrogenase, cytoplasmic OS=Gallus gallus GN=MDH1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDG-SYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            +IK RKLS A+ AA   CDH+RD  FGTP G +VS G   DG SY VP  ++YSFPV  ++  W   +GL I++FSR+K+DLT +EL+EEK
Sbjct:  234 VIKARKLSSAMSAAKAICDHVRDIWFGTPAGEFVSMGVISDGNSYGVPEDLLYSFPVVIKDKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.188e-20
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = -3
Query:  311 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEE 577
            II+ R  S A  AA+ A +HIRDW  GTPEG WVS      G Y +P G++YSFPVT+++G + + +GL I+EF+RK++++T +EL +E
Sbjct:  229 IIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.188e-20
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = -3
Query:  311 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEE 577
            II+ R  S A  AA+ A +HIRDW  GTPEG WVS      G Y +P G++YSFPVT+++G + + +GL I+EF+RK++++T +EL +E
Sbjct:  229 IIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
The following BLAST results are available for this feature:
BLAST of CF835908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
MDH_MYCPA1.045e-2054.44Malate dehydrogenase OS=Mycobacterium paratubercul... [more]
MDH_MYCA11.045e-2054.44Malate dehydrogenase OS=Mycobacterium avium (strai... [more]
MDH_SACEN1.365e-2055.56Malate dehydrogenase OS=Saccharopolyspora erythrae... [more]
MDH_BDEBA1.365e-2056.67Malate dehydrogenase OS=Bdellovibrio bacteriovorus... [more]
MDH_ARTAT1.365e-2051.65Malate dehydrogenase OS=Arthrobacter aurescens (st... [more]
MDHC_MOUSE1.365e-2056.04Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDHC_RAT1.783e-2056.04Malate dehydrogenase, cytoplasmic OS=Rattus norveg... [more]
MDHC_CHICK3.972e-2053.85Malate dehydrogenase, cytoplasmic OS=Gallus gallus... [more]
MDH_THETH5.188e-2048.31Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]
MDH_THET85.188e-2048.31Malate dehydrogenase OS=Thermus thermophilus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835908 ID=CF835908; Name=CF835908; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTCCTTAAACAAAAAAAAAATTGTTATTGATAGTT
TGATACATAAATCACAAGGGGCCTTTAATATCCATTTATCCAGGAAAAGT
AACAAAACTCCAAAATCCCGATTTTCAAATGCAAAAATAACAACATAAAA
TGGAAAGGCTTCTCCCTCATCAAGGGGTCCCCCAGGTTTCAACAAGGGTT
TTATTCAAAACTGGAACTATACCAACTACTCAAACAAAGCTAAGGGCCTT
GGTAACCCACTATTGAAGGGAAAAAAGCTTTTAAAAAAAACATGAGTATG
GGAGGGCCTTCTCCTCGGAAAGCTCCTCTGGTGTCAAGTCCAACTTCTTC
CTTGAAAATTCATCAATGGTGAGTCCTTGAAAAATTGGCCATTCACCGTT
GCGGGAGGTTACTGGGAATGAATAAATGACCCCACCTGGGACATTGTATG
AACCATCAAAGTATCCCCCCTTGGAAACCCAGGGGCCCTCAGGAGTTCCA
AAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGAGC
CCTCGAGAGCTTTCTGGGTTTGATGATTG
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