CF835908

Overview
NameCF835908
Unique NameCF835908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_POLSQ (Malate dehydrogenase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DHI DWV GT  G WV+ G    G Y +P  VIY FPVT  NGE+ + +GL IDEFSR+++  T  EL EE+A
Sbjct:  233 IIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYGIPAEVIYGFPVTCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_FRASC (Malate dehydrogenase OS=Frankia sp. (strain CcI3) GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R  S A  AAS A DHI  WV GTP G W S     DGSY VP G+I SFPVT+  G + I QGL +D FSR+K+D +  EL+EE+
Sbjct:  231 IIEVRGASSAASAASAAIDHIFTWVNGTPAGDWTSAAIPSDGSYGVPEGLISSFPVTASGGRFEIVQGLELDAFSREKIDASVRELAEER 320          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURCJ (Malate dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PVT  NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURCH (Malate dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PVT  NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURCC (Malate dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PVT  NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURCA (Malate dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PVT  NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH2_BURVG (Malate dehydrogenase 2 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PVT  NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH1_BURTA (Malate dehydrogenase 1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PVT  NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_DECAR (Malate dehydrogenase OS=Dechloromonas aromatica (strain RCB) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.856e-18
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = -3
Query:  311 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEE 577
            II+ R LS A  AA+ A DH+RDWV G+ E  WV+ G   DGSY +P G+++ FP   + G++ I QGL IDE+SR+K++ T +EL++E
Sbjct:  234 IIEARGLSSAASAANAAIDHVRDWVLGSDE--WVTMGVPSDGSYGIPAGIVFGFPCECKGGKFSIIQGLEIDEYSREKINFTLKELTDE 320          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.342e-18
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = -3
Query:  311 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEE 577
            +I+ R LS A  AA+   DH+R+W FGT +G W + G   DGSY +P GVIY FPV  +NG   I QGL I+ FSR +LD    EL++E
Sbjct:  230 VIEARGLSSAASAANAIIDHLRNWFFGTADGDWTTMGILSDGSYEIPEGVIYGFPVICKNGMREIVQGLEINPFSRTRLDAAYNELTQE 318          
The following BLAST results are available for this feature:
BLAST of CF835908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
MDH_POLSQ3.718e-1852.75Malate dehydrogenase OS=Polynucleobacter sp. (stra... [more]
MDH_FRASC3.718e-1853.33Malate dehydrogenase OS=Frankia sp. (strain CcI3) ... [more]
MDH_BURCJ3.718e-1853.33Malate dehydrogenase OS=Burkholderia cepacia (stra... [more]
MDH_BURCH3.718e-1853.33Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_BURCC3.718e-1853.33Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_BURCA3.718e-1853.33Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH2_BURVG3.718e-1853.33Malate dehydrogenase 2 OS=Burkholderia vietnamiens... [more]
MDH1_BURTA3.718e-1853.33Malate dehydrogenase 1 OS=Burkholderia thailandens... [more]
MDH_DECAR4.856e-1848.31Malate dehydrogenase OS=Dechloromonas aromatica (s... [more]
MDH_NITEC6.342e-1849.44Malate dehydrogenase OS=Nitrosomonas eutropha (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835908 ID=CF835908; Name=CF835908; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTCCTTAAACAAAAAAAAAATTGTTATTGATAGTT
TGATACATAAATCACAAGGGGCCTTTAATATCCATTTATCCAGGAAAAGT
AACAAAACTCCAAAATCCCGATTTTCAAATGCAAAAATAACAACATAAAA
TGGAAAGGCTTCTCCCTCATCAAGGGGTCCCCCAGGTTTCAACAAGGGTT
TTATTCAAAACTGGAACTATACCAACTACTCAAACAAAGCTAAGGGCCTT
GGTAACCCACTATTGAAGGGAAAAAAGCTTTTAAAAAAAACATGAGTATG
GGAGGGCCTTCTCCTCGGAAAGCTCCTCTGGTGTCAAGTCCAACTTCTTC
CTTGAAAATTCATCAATGGTGAGTCCTTGAAAAATTGGCCATTCACCGTT
GCGGGAGGTTACTGGGAATGAATAAATGACCCCACCTGGGACATTGTATG
AACCATCAAAGTATCCCCCCTTGGAAACCCAGGGGCCCTCAGGAGTTCCA
AAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGAGC
CCTCGAGAGCTTTCTGGGTTTGATGATTG
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