CF835908

Overview
NameCF835908
Unique NameCF835908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_XANOR (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae GN=mdh PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.282e-18
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDWV G+  G WV+ G   DGSY +  GVI+ FPVT+ NG++ + + L ID+FS+K +D T  EL EE++
Sbjct:  232 IIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGISEGVIFGFPVTTENGQYSLVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_XANOP (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.282e-18
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDWV G+  G WV+ G   DGSY +  GVI+ FPVT+ NG++ + + L ID+FS+K +D T  EL EE++
Sbjct:  232 IIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGISEGVIFGFPVTTENGQYSLVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_XANOM (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.282e-18
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDWV G+  G WV+ G   DGSY +  GVI+ FPVT+ NG++ + + L ID+FS+K +D T  EL EE++
Sbjct:  232 IIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGISEGVIFGFPVTTENGQYSLVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_NITMU (Malate dehydrogenase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.282e-18
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            +I+ R  S A  AA+ A  H+RDWV GTPEG WVS G   DGSY +P GVIY +PVT + GE+ I   L I EFSR K+  +  EL  E+
Sbjct:  230 VIEARGSSSAASAANAAICHMRDWVSGTPEGDWVSMGIPSDGSYGIPEGVIYGYPVTCQGGEYKIVPDLEISEFSRMKMQASYRELMGER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_POLNS (Malate dehydrogenase OS=Polynucleobacter necessarius (strain STIR1) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.082e-17
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DHI DWV GT  G WV+ G    G Y++P  VIY FPV   NGE+ + +GL IDEFSR+++  T  EL EE+A
Sbjct:  233 IIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYDIPAEVIYGFPVVCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURS3 (Malate dehydrogenase OS=Burkholderia sp. (strain 383) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.082e-17
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PV   NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVVCENGEYKRIEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_XYLFT (Malate dehydrogenase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.413e-17
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDW+ G+  G W++ G   DGSY +P G+I+ FPVT+ NGE+ I + L ID FS+  +D T  EL EE+A
Sbjct:  232 IIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_XYLFM (Malate dehydrogenase OS=Xylella fastidiosa (strain M12) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.413e-17
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDW+ G+  G W++ G   DGSY +P G+I+ FPVT+ NGE+ I + L ID FS+  +D T  EL EE+A
Sbjct:  232 IIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_XYLF2 (Malate dehydrogenase OS=Xylella fastidiosa (strain M23) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.413e-17
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDW+ G+  G W++ G   DGSY +P G+I+ FPVT+ NGE+ I + L ID FS+  +D T  EL EE+A
Sbjct:  232 IIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURCM (Malate dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.413e-17
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PV   NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVVCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
The following BLAST results are available for this feature:
BLAST of CF835908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
MDH_XANOR8.282e-1849.45Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_XANOP8.282e-1849.45Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_XANOM8.282e-1849.45Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_NITMU8.282e-1851.11Malate dehydrogenase OS=Nitrosospira multiformis (... [more]
MDH_POLNS1.082e-1751.65Malate dehydrogenase OS=Polynucleobacter necessari... [more]
MDH_BURS31.082e-1752.22Malate dehydrogenase OS=Burkholderia sp. (strain 3... [more]
MDH_XYLFT1.413e-1749.45Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_XYLFM1.413e-1749.45Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_XYLF21.413e-1749.45Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_BURCM1.413e-1752.22Malate dehydrogenase OS=Burkholderia ambifaria (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835908 ID=CF835908; Name=CF835908; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTCCTTAAACAAAAAAAAAATTGTTATTGATAGTT
TGATACATAAATCACAAGGGGCCTTTAATATCCATTTATCCAGGAAAAGT
AACAAAACTCCAAAATCCCGATTTTCAAATGCAAAAATAACAACATAAAA
TGGAAAGGCTTCTCCCTCATCAAGGGGTCCCCCAGGTTTCAACAAGGGTT
TTATTCAAAACTGGAACTATACCAACTACTCAAACAAAGCTAAGGGCCTT
GGTAACCCACTATTGAAGGGAAAAAAGCTTTTAAAAAAAACATGAGTATG
GGAGGGCCTTCTCCTCGGAAAGCTCCTCTGGTGTCAAGTCCAACTTCTTC
CTTGAAAATTCATCAATGGTGAGTCCTTGAAAAATTGGCCATTCACCGTT
GCGGGAGGTTACTGGGAATGAATAAATGACCCCACCTGGGACATTGTATG
AACCATCAAAGTATCCCCCCTTGGAAACCCAGGGGCCCTCAGGAGTTCCA
AAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGAGC
CCTCGAGAGCTTTCTGGGTTTGATGATTG
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