CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_ACIB3 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB307-0294) GN=mdh PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.692e-52
Identity = 106/202 (52.48%), Postives = 137/202 (67.82%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L++P   A +AL GV MEL D AFPL+ G++ T D   A    + A++VG  PR  GMER D++  N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+++K  V V+D++ + +WGNHS + Y D   AT N
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVNGEIFIGQGQALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVAVADIEKLTVWGNHSPTMYADYRFATAN 203          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_BURXL (Malate dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=mdh PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 105/200 (52.50%), Postives = 134/200 (67.00%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHAT 677
            MAK   RV VTGAAGQI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    V+ ++ + +WGNHS + YPD   AT
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLSGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGKALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRVAT 200          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_ACIBS (Malate dehydrogenase OS=Acinetobacter baumannii (strain SDF) GN=mdh PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 106/202 (52.48%), Postives = 137/202 (67.82%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L++P   A +AL GV MEL D AFPL+ G++ T D   A    + A++VG  PR  GMER D++  N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+++K  V V+D++ + +WGNHS + Y D   AT N
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVNGEIFIGQGQALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVVVADIEKLTVWGNHSPTMYADYRFATAN 203          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDHB_DICDI (Probable malate dehydrogenase 2, mitochondrial OS=Dictyostelium discoideum GN=mdhB PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 103/200 (51.50%), Postives = 135/200 (67.50%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            K PVRV +TGA+GQIGY L+  IA G MLG DQP+IL  L++P A  +L GV MEL D AFPL+KG+V +    EA  G + A++VG  PR +GMER D++  N  I+  Q  AL++ A     +VLVV NPANTNALI    AP+I  K  + +TRLDHNR L Q+++K    V+D++   IWGNHS++QYPD+N  TV
Sbjct:   22 KAPVRVAITGASGQIGYQLLFRIASGDMLGKDQPIILQCLELPGAMNSLKGVSMELDDCAFPLLKGIVQSDKPEEAFAGADYALLVGARPRSKGMERGDLLKANAEIFSVQGKALDKSANRDTLRVLVVGNPANTNALIAARNAPNIDPKRFSAMTRLDHNRGLAQLADKTGSAVTDIEKFCIWGNHSATQYPDINFGTV 221          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_XANOR (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae GN=mdh PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.998e-52
Identity = 108/205 (52.68%), Postives = 139/205 (67.80%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 692
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++    A  AL GV MEL D AFPL+ G+V T DA  A   +++A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  KN T + RLDHNRAL Q++ KL   V  ++ +++WGNHS + YPD   AT + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLNPKNFTAMLRLDHNRALSQLALKLGKPVGGIEKLVVWGNHSPTMYPDYRFATSDGAS 206          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_XANOM (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=mdh PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.998e-52
Identity = 108/205 (52.68%), Postives = 139/205 (67.80%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 692
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++    A  AL GV MEL D AFPL+ G+V T DA  A   +++A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  KN T + RLDHNRAL Q++ KL   V  ++ +++WGNHS + YPD   AT + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLNPKNFTAMLRLDHNRALSQLALKLGKPVGGIEKLVVWGNHSPTMYPDYRFATSDGAS 206          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_BDEBA (Malate dehydrogenase OS=Bdellovibrio bacteriovorus GN=mdh PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.998e-52
Identity = 110/207 (53.14%), Postives = 137/207 (66.18%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS---IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTA 689
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPL+  ++AT D   A    ++A++VG  PR  GMERKD+++ N  I+  Q  A+ ++A PN KVLVV NPANTNA I  + A     + AKN T + RLDHNRAL Q++ K    V+  K V +WGNHS + YPDV  AT + A
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGAMLGADQPVILQLLEIPDEKAQKALKGVMMELEDCAFPLLHSMIATGDPAVAFKDADVALLVGARPRGPGMERKDLLTANGQIFTVQGEAIGKYANPNVKVLVVGNPANTNAYIAMKSAMKHGRVKAKNFTAMLRLDHNRALSQLATKTGKPVASFKKVAVWGNHSPTMYPDVRFATADGA 208          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_VARPS (Malate dehydrogenase OS=Variovorax paradoxus (strain S110) GN=mdh PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.833e-52
Identity = 108/214 (50.47%), Postives = 142/214 (66.36%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRE 713
            M+K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPL+ G+ A  D + A    + A++VG  PR  GMER ++++ N +I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +P KN T + RLDHNRA  QI+ K    V+D++ +++WGNHS + Y D   AT+   +  K + +
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVMMELDDCAFPLLAGMEAHGDPMTAFKDADYALLVGSRPRGPGMERAELLAVNGAIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRKNFTAMLRLDHNRAASQIAAKTGKAVADIEKLVVWGNHSPTMYADYRFATIKGESVAKMIND 214          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_POLSJ (Malate dehydrogenase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=mdh PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.023e-51
Identity = 107/214 (50.00%), Postives = 142/214 (66.36%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRE 713
            M+K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P     +AL GV MEL D AFPL+ G+ A +D + A    + A++VG  PR  GMER ++++ N +I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +P KN T + RLDHNRA  QI+ K    V+D++ + +WGNHS + Y D   AT+N  +  K + +
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPVEGPQKALKGVMMELDDCAFPLLAGMEAHSDPMTAFKDADYALLVGSRPRGPGMERAELLAVNGAIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRKNFTAMLRLDHNRAASQIAAKTGKAVADIEKLTVWGNHSPTMYADYRFATINGESVAKMIND 214          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_MYCA1 (Malate dehydrogenase OS=Mycobacterium avium (strain 104) GN=mdh PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.023e-51
Identity = 101/201 (50.25%), Postives = 138/201 (68.66%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV    D  +   G N+A++VG  PR  GMER D++  N +I+ AQ  AL + AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q+++K   +V+D+  + IWGNHS++QYPD+ HA V
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGADPNKIFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEVAADDIRVGVTGNPANTNALIAMSNAPDIPRERFSALTRLDHNRAISQLAKKTGAKVTDITKMTIWGNHSATQYPDIFHAEV 201          
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_ACIB32.692e-5252.48Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_BURXL3.516e-5252.50Malate dehydrogenase OS=Burkholderia xenovorans (s... [more]
MDH_ACIBS3.516e-5252.48Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDHB_DICDI3.516e-5251.50Probable malate dehydrogenase 2, mitochondrial OS=... [more]
MDH_XANOR5.998e-5252.68Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_XANOM5.998e-5252.68Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_BDEBA5.998e-5253.14Malate dehydrogenase OS=Bdellovibrio bacteriovorus... [more]
MDH_VARPS7.833e-5250.47Malate dehydrogenase OS=Variovorax paradoxus (stra... [more]
MDH_POLSJ1.023e-5150.00Malate dehydrogenase OS=Polaromonas sp. (strain JS... [more]
MDH_MYCA11.023e-5150.25Malate dehydrogenase OS=Mycobacterium avium (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
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