CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_MYCTU (Malate dehydrogenase OS=Mycobacterium tuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.745e-51
Identity = 102/201 (50.75%), Postives = 138/201 (68.66%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV   +D  +   GV++A++VG  PR  GMER D++  N +I+ AQ  AL   AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV 201          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_MYCTA (Malate dehydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mdh PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.745e-51
Identity = 102/201 (50.75%), Postives = 138/201 (68.66%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV   +D  +   GV++A++VG  PR  GMER D++  N +I+ AQ  AL   AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV 201          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_MYCBT (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=mdh PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.745e-51
Identity = 102/201 (50.75%), Postives = 138/201 (68.66%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV   +D  +   GV++A++VG  PR  GMER D++  N +I+ AQ  AL   AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV 201          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_MYCBP (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=mdh PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.745e-51
Identity = 102/201 (50.75%), Postives = 138/201 (68.66%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV   +D  +   GV++A++VG  PR  GMER D++  N +I+ AQ  AL   AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV 201          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_MYCBO (Malate dehydrogenase OS=Mycobacterium bovis GN=mdh PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.745e-51
Identity = 102/201 (50.75%), Postives = 138/201 (68.66%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPL+ GV   +D  +   GV++A++VG  PR  GMER D++  N +I+ AQ  AL   AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPD+ HA V
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV 201          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_ACICJ (Malate dehydrogenase OS=Acidiphilium cryptum (strain JF-5) GN=mdh PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.745e-51
Identity = 104/199 (52.26%), Postives = 129/199 (64.82%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHA 674
            MAK PVR+ VTGAAGQI YALV  IA G +LG DQPVILH+LD+P    AL GV MEL D AFPL+ G+VAT D   A   ++I  +VG  PR +GMERKD++  N  I+  Q  AL + A  + +VLVV NPANTNA I  + AP +     + + RLDHNRA   ++ K  V V DV  +I+WGNHS + YPD   A
Sbjct:    1 MAKSPVRIAVTGAAGQIAYALVFRIASGALLGPDQPVILHLLDLPQMQGALGGVMMELEDCAFPLLAGMVATDDPKVAFKDIDIGFLVGARPRGKGMERKDLLGANAEIFTVQGRALNEVAKRSARVLVVGNPANTNAYIAMKSAPDLSPDCFSAMIRLDHNRAASMLAAKAGVNVGDVGKLIVWGNHSPTMYPDYRFA 199          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_XANOP (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=mdh PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.279e-51
Identity = 107/205 (52.20%), Postives = 138/205 (67.32%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 692
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++    A  AL GV MEL D AFPL+ G+V T DA  A   +++A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +   N T + RLDHNRAL Q++ KL   V  ++ +++WGNHS + YPD   AT + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLNPNNFTAMLRLDHNRALSQLALKLGKPVGGIEKLVVWGNHSPTMYPDYRFATSDGAS 206          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_ARTAT (Malate dehydrogenase OS=Arthrobacter aurescens (strain TC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.279e-51
Identity = 100/197 (50.76%), Postives = 135/197 (68.53%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            P+++ VTGAAGQIGY+L+  IA G + G D PV L +L+I PA +AL GV MEL D AFP +  V    DA     GV +A++VG  PR +GMER D++S N +I+ AQ  AL + AA + ++ V  NPANTNALI    AP IPA   + LTRLDHNRA+GQ++ K + +V D++ + +WGNHS++QYPD+ HA V
Sbjct:    4 PIKIAVTGAAGQIGYSLLFRIASGALFGGDTPVQLRLLEITPALKALEGVVMELDDCAFPALDSVEIGDDADHIFDGVTLALLVGARPRSKGMERGDLLSANGAIFTAQGKALNRVAADDVRIGVTGNPANTNALIAMSNAPDIPASRFSALTRLDHNRAIGQLAAKTHARVGDIRKMTVWGNHSATQYPDIFHAEV 200          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH2_BURTA (Malate dehydrogenase 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.977e-51
Identity = 99/214 (46.26%), Postives = 145/214 (67.76%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            M  E  R+ V+GAAGQI Y+L+  IA+G +LG DQPVIL +LD+P A  A+ GV MEL D AFPL+K +   TD   A    + A +VG  PR +GMER+D++++N +I++ Q  AL + A+ + KVLVV NPANTNA IL+ FAP +P   I+ + RLDHNRA+  ++++ NV V  + ++++WGNHS + +PD  HA +    G + V++L+
Sbjct:    1 MNTEAKRIAVSGAAGQIAYSLLFRIAQGDLLGEDQPVILQLLDLPQAYGAVQGVVMELQDCAFPLLKEIQVATDPHAAFLNADYAFLVGSKPRTKGMERRDLLAENAAIFRTQGRALNEAASRDVKVLVVGNPANTNASILRRFAPDLPDDAISAMIRLDHNRAVSMLAQRCNVDVDSIADMVVWGNHSPTMFPDYRHARI----GRRLVKDLI 210          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_NOCFA (Malate dehydrogenase OS=Nocardia farcinica GN=mdh PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.660e-51
Identity = 103/210 (49.05%), Postives = 136/210 (64.76%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            PV V VTGAAGQI Y L+  IA G MLG   P+ L +L+IP A  +L GV MEL D AFPL+  +  + D      G N+A++VG  PR  GMER D+++ N  I+  Q  A+   AA + KVLVV NPANTNA I    AP +PA+  T +TRLDHNRA+ Q+++K     +++  + +WGNHS++QYPD+ HATV   AG +P RELV
Sbjct:    9 PVTVTVTGAAGQIAYGLLFRIASGAMLGPHTPIRLRLLEIPAAVASLEGVAMELEDGAFPLLDAIDISDDPWTGFAGANVALLVGARPRTAGMERADLLAANGPIFTDQGQAINAVAADDVKVLVVGNPANTNAFIAMSNAPDVPAERFTAMTRLDHNRAIAQLAKKTGAPATEIHRIAVWGNHSATQYPDLTHATV---AG-RPARELV 214          
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_MYCTU1.745e-5150.75Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCTA1.745e-5150.75Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCBT1.745e-5150.75Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBP1.745e-5150.75Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBO1.745e-5150.75Malate dehydrogenase OS=Mycobacterium bovis GN=mdh... [more]
MDH_ACICJ1.745e-5152.26Malate dehydrogenase OS=Acidiphilium cryptum (stra... [more]
MDH_XANOP2.279e-5152.20Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_ARTAT2.279e-5150.76Malate dehydrogenase OS=Arthrobacter aurescens (st... [more]
MDH2_BURTA2.977e-5146.26Malate dehydrogenase 2 OS=Burkholderia thailandens... [more]
MDH_NOCFA8.660e-5149.05Malate dehydrogenase OS=Nocardia farcinica GN=mdh ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
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