CF835909

Overview
NameCF835909
Unique NameCF835909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:82..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_VEREI (Malate dehydrogenase OS=Verminephrobacter eiseniae (strain EF01-2) GN=mdh PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.131e-50
Identity = 105/202 (51.98%), Postives = 136/202 (67.33%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHAT 677
            M K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P     +ALNGV MEL D AFPL+ G+ A +D + A    + A++VG  PR  GMER ++++ N +I+ AQ  AL   A+   KVLVV NPANTNA I  + AP +P KN T + RLDHNRA+ QI+ K    V+D++ + +WGNHS + Y D   AT
Sbjct:    1 MNKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPAEGPQKALNGVMMELDDCAFPLLAGMTAHSDPMAAFKDADYALLVGSRPRGPGMERAELLAVNGAIFIAQGKALNAVASRQVKVLVVGNPANTNAFIAMQSAPDLPRKNFTAMLRLDHNRAVSQIAAKTGQAVADIEKLTVWGNHSPTMYADYRFAT 202          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.131e-50
Identity = 100/202 (49.50%), Postives = 128/202 (63.37%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG 695
            P  V VTGAAG IGYA +  IA G MLG D P+ L +L+IPPA  A  G  MEL D+AFPL+  V    D      G ++A+++G  PR +GMER D+++ N  I+  Q  A+ Q AA   +VLVV NPANTNAL+    AP +PA+  T LTRLDHNRA+ Q++      V D+  V IWGNHSS+QYPD+ HA V   +G
Sbjct:    7 PAVVTVTGAAGSIGYAALFRIAAGAMLGPDTPIRLRLLEIPPAVSAAEGTAMELDDSAFPLLLDVEVHDDPKRGFDGTDVALLIGSRPRSKGMERGDLLAANGQIFTVQGRAINQVAADGVRVLVVGNPANTNALVAANNAPDVPAERFTALTRLDHNRAIAQLARHSGAAVRDISRVTIWGNHSSTQYPDIFHARVGDRSG 208          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_NOCSJ (Malate dehydrogenase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=mdh PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.477e-50
Identity = 103/201 (51.24%), Postives = 138/201 (68.66%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFP + GV    DA +   GVN+A++VG  PR  GMER D++S N +I+ AQ  AL + AA + ++ V  NPANTNALI    AP IP    + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPDV HA +
Sbjct:    1 MSSTPLKVAVTGAAGQIGYSLLFRLASGSLLG-DRPIELRLLEITPALKALEGVVMELDDCAFPNLAGVQIGDDAEQIFDGVNLALLVGARPRGPGMERGDLLSANGAIFTAQGKALNKVAADDVRIGVTGNPANTNALIAMTNAPDIPQARFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDVFHAEI 200          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_RHOSR (Malate dehydrogenase OS=Rhodococcus sp. (strain RHA1) GN=mdh PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.929e-50
Identity = 100/202 (49.50%), Postives = 129/202 (63.86%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG 695
            P  V VTGAAG IGYA +  IA G MLG D P+ L +L+IP A  A  G  MEL D+AFPL++ +    D      G ++A+++G  PR +GMER D+++ N  I+  Q  AL Q AA   +VLVV NPANTNAL+    AP IPA+  T LTRLDHNRA+ Q++      V D++ V IWGNHSS+QYPD+ HA V   +G
Sbjct:    7 PAVVTVTGAAGSIGYASLFRIAAGEMLGPDTPIRLRLLEIPSAVSAAEGTAMELDDSAFPLLRDIEVHDDPKRGFDGTDVALLIGSRPRSKGMERGDLLAANGQIFTVQGRALNQVAADGVRVLVVGNPANTNALVAANNAPDIPAERFTALTRLDHNRAIAQLARHSGAAVKDIRRVAIWGNHSSTQYPDIFHARVGDRSG 208          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_MYCLE (Malate dehydrogenase OS=Mycobacterium leprae GN=mdh PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.298e-50
Identity = 105/214 (49.07%), Postives = 141/214 (65.89%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AF L+ GV    D  +   GVN+A++VG  PR  GMER D++  N +I+ AQ  AL   AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K    V+D++ + IWGNHS++QYPDV HA +    G K   E+V
Sbjct:    1 MSPRPLKVAVTGAAGQIGYSLLFRLASGSLLGLDRPIELRLLEIEPALKALEGVVMELDDCAFLLLAGVEIGADPNKVFDGVNLALLVGARPRGPGMERGDLLEANGAIFTAQGKALNAVAAADIRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAIAQLATKTGSAVTDIRKMTIWGNHSATQYPDVFHAEI----GGKNAAEVV 210          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_MYCVP (Malate dehydrogenase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.332e-50
Identity = 99/202 (49.01%), Postives = 126/202 (62.38%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG 695
            PV V VTGAAG IGYA +  IA G MLG   PV L +L++P A  A  GV MEL D AFPL+ G     D   A  GV++A+++G  PR +GMER D++  N  I+     AL   A+P+ +VLVV NPANTNAL+    AP IPA   T LTRLDHNRA+   +    V V+++  + IWGNHS +QYPD+ HA V   +G
Sbjct:    8 PVTVAVTGAAGHIGYAALFRIAAGAMLGHTTPVTLRLLELPDAVRAAEGVVMELEDGAFPLLAGTEIYDDPTRAFDGVDVALLIGARPRTKGMERADLLGANAEIFATSGKALNAGASPDVRVLVVGNPANTNALVASAHAPDIPADRFTALTRLDHNRAVAATARHSGVPVTEISRMTIWGNHSPTQYPDIFHAVVGGRSG 209          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_XYLFA (Malate dehydrogenase OS=Xylella fastidiosa GN=mdh PE=3 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 9.575e-50
Identity = 104/202 (51.49%), Postives = 137/202 (67.82%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K  VRV VTGAAGQIGY+L+  IA G M G D+PVIL ML++P   A  AL GV MEL D AFPL+ G+V T +   A    ++A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  K+ T + RLDHNRAL Q+S KL+  V++++ +I+WGNHS + YPD   AT +
Sbjct:    2 KSLVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVGTDNPDIAFKDADVALLVGSRPRGPGMERKDLLMENAKIFTAQGAALNKVARRDVKVLVVGNPANTNAYIAMKSAPDLNPKHFTAMLRLDHNRALSQLSTKLSKPVANIEKLIVWGNHSPTMYPDYRFATAD 203          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_CORGL (Malate dehydrogenase OS=Corynebacterium glutamicum GN=mdh PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.575e-50
Identity = 101/208 (48.56%), Postives = 138/208 (66.35%), Query Frame = 3
Query:   96 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            +V VTGAAGQI Y+L+  IA G + GTD PV L +L+IP A     GV MEL+D+AFPL++ +  T DA EA  G N A +VG  PR +G ER D+++ N  I+  Q  A+  +AA + +VLVV NPANTNALI    AP +PA     + RLDHNRA+ Q++ KL    ++  N+++WGNHS++Q+PD+ +ATV    GEK V +LV
Sbjct:   11 KVTVTGAAGQISYSLLWRIANGEVFGTDTPVELKLLEIPQALGGAEGVAMELLDSAFPLLRNITITADANEAFDGANAAFLVGAKPRGKGEERADLLANNGKIFGPQGKAINDNAADDIRVLVVGNPANTNALIASAAAPDVPASRFNAMMRLDHNRAISQLATKLGRGSAEFNNIVVWGNHSATQFPDITYATV---GGEK-VTDLV 214          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH_POLNA (Malate dehydrogenase OS=Polaromonas naphthalenivorans (strain CJ2) GN=mdh PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.251e-49
Identity = 103/203 (50.74%), Postives = 137/203 (67.49%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            M+K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P     +AL GV MEL D AFPL+  + A +D + A    + A++VG  PR  GMER ++++ N +I+ AQ  AL   A+ + +VLVV NPANTNA I  + AP +PAKN T + RLDHNRA  QI+ K    V+D++ + +WGNHS + Y D   AT+
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPVEGPQKALKGVMMELDDCAFPLLVEMTAHSDPMTAFKDADYALLVGSRPRGPGMERAELLAVNGAIFTAQGKALNAVASRDVRVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQIAAKTGKAVADIEKLTVWGNHSPTMYADYRFATI 203          
BLAST of CF835909 vs. ExPASy Swiss-Prot
Match: MDH1_BURVG (Malate dehydrogenase 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.133e-49
Identity = 97/202 (48.02%), Postives = 137/202 (67.82%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            M+K   RV VTGAAGQI Y+L+  IARG +LG DQPVIL +L++P A +AL GV MEL D AFPL++ V  + D   A    + A++VG  PR +GMER+D+++ N +I+++Q  AL + A    KVLVV NPANTNA + + +AP +PA  IT + RLDHNRA+ +++ +  V V  V  + +WGNHS + +PD  HA ++
Sbjct:    1 MSKPARRVAVTGAAGQIAYSLLFRIARGDLLGDDQPVILQLLELPHALDALRGVVMELEDCAFPLLQSVEISDDPRVAFRDADYAMLVGSRPRGKGMERRDLLAANAAIFRSQGEALNEVANRQVKVLVVGNPANTNAWVARHYAPDLPADAITAMIRLDHNRAVSKLAARCGVTVDAVSRMAVWGNHSPTMFPDYRHALID 202          
The following BLAST results are available for this feature:
BLAST of CF835909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_VEREI1.131e-5051.98Malate dehydrogenase OS=Verminephrobacter eiseniae... [more]
MDH_RHOOB1.131e-5049.50Malate dehydrogenase OS=Rhodococcus opacus (strain... [more]
MDH_NOCSJ1.477e-5051.24Malate dehydrogenase OS=Nocardioides sp. (strain B... [more]
MDH_RHOSR1.929e-5049.50Malate dehydrogenase OS=Rhodococcus sp. (strain RH... [more]
MDH_MYCLE4.298e-5049.07Malate dehydrogenase OS=Mycobacterium leprae GN=md... [more]
MDH_MYCVP7.332e-5049.01Malate dehydrogenase OS=Mycobacterium vanbaalenii ... [more]
MDH_XYLFA9.575e-5051.49Malate dehydrogenase OS=Xylella fastidiosa GN=mdh ... [more]
MDH_CORGL9.575e-5048.56Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_POLNA1.251e-4950.74Malate dehydrogenase OS=Polaromonas naphthalenivor... [more]
MDH1_BURVG2.133e-4948.02Malate dehydrogenase 1 OS=Burkholderia vietnamiens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835909 ID=CF835909; Name=CF835909; organism=Citrus sinensis; type=EST; length=719bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCCGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
ACCTGTCCGTGAGCTTGTC
back to top